Variant report

Variant	rs10849884
Chromosome Location	chr12:121871903-121871904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121868417..121872600-chr12:121875201..121878428,3	K562	blood:
2	chr12:121871414..121873881-chr12:121874979..121877789,2	MCF-7	breast:
3	chr12:121869933..121872721-chr12:121879594..121881774,2	MCF-7	breast:
4	chr12:121860069..121861863-chr12:121870416..121872024,2	K562	blood:
5	chr12:121870653..121873379-chr12:121889843..121892356,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10444489	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10444491	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10444492	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1064951	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10744763	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10744764	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10774594	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10774595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10774596	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10774597	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10774598	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849873	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849875	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849877	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849878	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849879	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849880	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849885	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849887	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10849888	0.82[AFR][1000 genomes]
rs10849889	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10849891	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065549	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065551	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065563	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065565	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065576	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065577	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065578	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065579	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065582	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11065583	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065585	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11838335	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12427382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12578785	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12581843	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12581861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288154	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3751131	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3817543	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3817544	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817545	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817546	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817547	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3817549	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817551	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4081775	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57185007	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57889600	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57971979	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58609847	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58849369	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59103597	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59190874	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61953461	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61953462	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61953497	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61955092	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61955131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61955132	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61955138	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9300314	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951498	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634168	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121841400-121874600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:121850400-121887400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr12:121850800-121874600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:121851600-121872200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr12:121851600-121874400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:121851800-121874600	Strong transcription	Dnd41	blood
7	chr12:121851800-121891400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr12:121852000-121874400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:121852200-121872200	Strong transcription	Liver	Liver
10	chr12:121852200-121873400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:121852200-121874400	Strong transcription	Fetal Stomach	stomach
12	chr12:121852200-121883200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr12:121852200-121884800	Strong transcription	Primary T cells from cord blood	blood
14	chr12:121852400-121872000	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr12:121852400-121874400	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr12:121852400-121881800	Strong transcription	Duodenum Mucosa	Duodenum
17	chr12:121852600-121872200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr12:121852600-121881600	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr12:121852800-121872000	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr12:121852800-121874200	Strong transcription	Thymus	Thymus
21	chr12:121853000-121874400	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr12:121853000-121884800	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr12:121853600-121872000	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr12:121853800-121874000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr12:121853800-121880800	Strong transcription	Ovary	ovary
26	chr12:121853800-121880800	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr12:121853800-121881000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr12:121853800-121881000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr12:121854000-121872000	Strong transcription	Fetal Lung	lung
30	chr12:121854000-121872200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:121854000-121874200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr12:121854000-121874600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr12:121854000-121880600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr12:121854000-121881400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr12:121854200-121872200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr12:121854200-121881000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr12:121854400-121873400	Strong transcription	A549	lung
38	chr12:121855000-121872000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr12:121855600-121874000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr12:121858600-121876800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr12:121859600-121872200	Strong transcription	Lung	lung
42	chr12:121859800-121874000	Strong transcription	Brain Germinal Matrix	brain
43	chr12:121861400-121874800	Strong transcription	Brain Anterior Caudate	brain
44	chr12:121861400-121903600	Weak transcription	Right Atrium	heart
45	chr12:121861600-121877400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr12:121861600-121881000	Strong transcription	Fetal Muscle Trunk	muscle
47	chr12:121861800-121872200	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr12:121862400-121872200	Strong transcription	Left Ventricle	heart
49	chr12:121863400-121874600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr12:121863600-121872000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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