Variant report

Variant	rs10849887
Chromosome Location	chr12:121891419-121891420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121844064..121845743-chr12:121890048..121892502,2	K562	blood:
2	chr12:121890806..121892891-chr12:121895459..121897017,2	K562	blood:
3	chr12:121755526..121757349-chr12:121890334..121892090,2	K562	blood:
4	chr12:121888904..121894167-chr12:121900825..121906643,6	K562	blood:
5	chr12:121878313..121883290-chr12:121886772..121892641,6	MCF-7	breast:
6	chr12:121870653..121873379-chr12:121889843..121892356,2	K562	blood:
7	chr12:121891205..121893580-chr12:121898932..121901141,2	MCF-7	breast:
8	chr12:121883486..121886265-chr12:121890331..121891870,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000089094	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10444489	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10444491	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10444492	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1064951	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10744763	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10744764	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10774594	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10774595	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10774596	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10774597	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10774598	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10849873	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10849875	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10849877	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10849878	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10849879	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10849880	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10849882	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10849884	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10849885	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10849889	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10849891	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11065549	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11065551	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11065563	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11065565	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11065575	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11065576	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11065577	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11065578	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11065579	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11065582	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065583	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11065585	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11838335	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12427382	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12578785	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12581843	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12581861	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2288154	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3751131	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3817543	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3817544	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3817545	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3817546	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3817547	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3817549	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3817551	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4081775	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4980986	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs57185007	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57889600	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57971979	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58609847	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58849369	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59103597	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59190874	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61953461	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61953462	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61953497	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61955092	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61955131	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61955132	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61955138	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6489812	0.82[AMR][1000 genomes]
rs9300314	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs951498	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9634167	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9634168	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121861400-121903600	Weak transcription	Right Atrium	heart
2	chr12:121868000-121893600	Weak transcription	Psoas Muscle	Psoas
3	chr12:121879200-121892400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr12:121879200-121898600	Weak transcription	HSMMtube	muscle
5	chr12:121879200-121903400	Weak transcription	Hela-S3	cervix
6	chr12:121879200-121904000	Weak transcription	Small Intestine	intestine
7	chr12:121880000-121903600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:121880000-121904000	Weak transcription	Aorta	Aorta
9	chr12:121880800-121902800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:121881800-121903400	Weak transcription	A549	lung
11	chr12:121883200-121891600	Weak transcription	Brain Hippocampus Middle	brain
12	chr12:121883200-121891800	Weak transcription	Brain Substantia Nigra	brain
13	chr12:121883200-121892800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr12:121883200-121903600	Weak transcription	Brain Anterior Caudate	brain
15	chr12:121883400-121892000	Weak transcription	Brain Angular Gyrus	brain
16	chr12:121883400-121893000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr12:121883400-121893800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr12:121883400-121903200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr12:121885200-121896200	Strong transcription	Fetal Stomach	stomach
20	chr12:121885600-121892400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr12:121885600-121896200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:121885600-121903600	Weak transcription	Liver	Liver
23	chr12:121886200-121896200	Strong transcription	Dnd41	blood
24	chr12:121886400-121894200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:121887200-121902200	Weak transcription	Fetal Brain Male	brain
26	chr12:121888600-121891600	Enhancers	Placenta Amnion	Placenta Amnion
27	chr12:121888600-121891800	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr12:121888600-121895200	Enhancers	Placenta	Placenta
29	chr12:121889000-121892800	Weak transcription	Fetal Heart	heart
30	chr12:121889000-121893200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr12:121889400-121894400	Strong transcription	Thymus	Thymus
32	chr12:121889400-121902000	Weak transcription	K562	blood
33	chr12:121889800-121894800	Enhancers	Esophagus	oesophagus
34	chr12:121889800-121903400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr12:121890200-121892200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr12:121890200-121892400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr12:121890200-121893400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr12:121890200-121893800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr12:121890200-121899200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr12:121890200-121903400	Weak transcription	Fetal Lung	lung
41	chr12:121890400-121891600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr12:121890400-121893000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr12:121890400-121902800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr12:121890400-121903400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr12:121890600-121891600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr12:121890600-121892200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr12:121890600-121894200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr12:121890600-121898200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr12:121890800-121891600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr12:121890800-121892000	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links