Variant report

Variant	rs61953497
Chromosome Location	chr12:121909573-121909574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121903708..121907527-chr12:121909090..121912019,3	K562	blood:
2	chr12:121908083..121909947-chr6:33379733..33381341,2	MCF-7	breast:
3	chr12:121904155..121907527-chr12:121908588..121911901,5	K562	blood:

Variant related genes	Relation type
ENSG00000112511	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10444489	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10444491	0.92[AMR][1000 genomes]
rs10444492	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1064951	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10744763	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10744764	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10774594	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10774595	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10774596	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10774597	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10774598	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849873	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10849877	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849878	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10849879	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849880	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849882	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849884	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849885	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10849887	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10849889	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10849891	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065549	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065551	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065563	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065565	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065575	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065576	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065577	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065578	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065579	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065582	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11065583	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065585	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11838335	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12427382	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12578785	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12581843	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12581861	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2288154	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3751131	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3817543	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817544	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3817545	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3817546	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3817547	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3817549	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3817551	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4081775	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4980986	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57185007	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57889600	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57971979	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58609847	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58849369	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59103597	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59190874	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61953461	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61953462	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61955092	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61955131	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61955132	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61955138	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6489812	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7972181	0.81[ASN][1000 genomes]
rs9300314	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs951498	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9634167	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9634168	0.81[AMR][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121905800-121923200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:121906000-121910000	Weak transcription	Liver	Liver
3	chr12:121906000-121910800	Weak transcription	Pancreas	Pancrea
4	chr12:121906000-121916600	Weak transcription	Gastric	stomach
5	chr12:121906000-121921400	Weak transcription	Thymus	Thymus
6	chr12:121906000-121927400	Weak transcription	Lung	lung
7	chr12:121906000-121927600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr12:121906000-121927600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr12:121906000-121937800	Weak transcription	Aorta	Aorta
10	chr12:121906000-121938000	Weak transcription	Left Ventricle	heart
11	chr12:121906200-121912000	Weak transcription	Fetal Intestine Small	intestine
12	chr12:121906200-121914000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr12:121906200-121914600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:121906200-121914600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr12:121906200-121919800	Weak transcription	Fetal Thymus	thymus
16	chr12:121906200-121920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr12:121906200-121922800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr12:121906200-121927400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr12:121906200-121927600	Weak transcription	Spleen	Spleen
20	chr12:121906200-121928200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr12:121906200-121938000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr12:121906400-121910200	Weak transcription	Fetal Kidney	kidney
23	chr12:121906400-121910200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr12:121906400-121912000	Weak transcription	Fetal Stomach	stomach
25	chr12:121906400-121912600	Weak transcription	Dnd41	blood
26	chr12:121906400-121914400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr12:121906400-121917600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr12:121906400-121917800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr12:121906400-121919000	Weak transcription	GM12878-XiMat	blood
30	chr12:121906400-121920400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:121906400-121921400	Weak transcription	Fetal Brain Male	brain
32	chr12:121906400-121921600	Weak transcription	Primary T cells from cord blood	blood
33	chr12:121906400-121927600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr12:121906400-121929000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr12:121906400-121933400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr12:121906400-121933400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr12:121906400-121933800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr12:121906600-121914600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr12:121906600-121914600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr12:121906600-121921000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr12:121906600-121927400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr12:121906600-121927600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr12:121906600-121927600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr12:121906600-121927600	Weak transcription	Fetal Brain Female	brain
45	chr12:121906600-121928000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr12:121906600-121938000	Weak transcription	NHDF-Ad	bronchial
47	chr12:121906800-121909600	Weak transcription	HepG2	liver
48	chr12:121907600-121909600	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr12:121907800-121912400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr12:121908000-121909600	Enhancers	Monocytes-CD14+_RO01746	blood

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