Variant report

Variant	rs11065585
Chromosome Location	chr12:121903971-121903972
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121903079..121905938-chr12:122064263..122065775,2	MCF-7	breast:
2	chr12:121732867..121735016-chr12:121903927..121906656,4	K562	blood:
3	chr12:121836528..121838994-chr12:121903145..121905381,3	K562	blood:
4	chr12:121879603..121883744-chr12:121903538..121907174,6	MCF-7	breast:
5	chr12:121903815..121906765-chr12:121910137..121911892,2	MCF-7	breast:
6	chr12:121861656..121865460-chr12:121901915..121906805,6	K562	blood:
7	chr12:121902658..121907568-chr12:122239086..122242306,5	K562	blood:
8	chr12:121732416..121735864-chr12:121903686..121906224,3	K562	blood:
9	chr12:121902723..121905166-chr9:139618186..139620780,2	MCF-7	breast:
10	chr12:121902476..121905404-chr12:122150054..122152707,2	K562	blood:
11	chr12:121903198..121905142-chr12:122229312..122232196,2	K562	blood:
12	chr12:121881584..121884550-chr12:121902935..121904495,2	MCF-7	breast:
13	chr12:121853266..121855727-chr12:121903506..121905679,2	MCF-7	breast:
14	chr12:121902246..121907496-chr12:121907780..121909749,6	MCF-7	breast:
15	chr12:121865513..121867270-chr12:121902335..121904381,2	K562	blood:
16	chr12:121836528..121838253-chr12:121903513..121905381,2	K562	blood:
17	chr12:121903708..121907527-chr12:121909090..121912019,3	K562	blood:
18	chr12:121888904..121894167-chr12:121900825..121906643,6	K562	blood:
19	chr12:121903618..121906631-chr12:121974140..121977262,7	MCF-7	breast:
20	chr12:121879600..121882524-chr12:121903519..121905264,3	K562	blood:
21	chr12:121770793..121774780-chr12:121903688..121906322,3	MCF-7	breast:
22	chr12:121647824..121650350-chr12:121903258..121906224,2	K562	blood:
23	chr12:121837983..121842032-chr12:121901843..121907067,6	MCF-7	breast:
24	chr12:121903591..121905313-chr12:122372239..122374575,2	K562	blood:
25	chr12:121902658..121907689-chr12:122234728..122241054,9	K562	blood:
26	chr12:121903895..121905502-chr12:122123601..122125123,2	K562	blood:
27	chr12:121903609..121905118-chr12:122233472..122235264,2	MCF-7	breast:
28	chr12:121884514..121887662-chr12:121903077..121905213,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000182500	Chromatin interaction
ENSG00000188735	Chromatin interaction
ENSG00000110931	Chromatin interaction
ENSG00000212694	Chromatin interaction
ENSG00000170633	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000139725	Chromatin interaction
ENSG00000089053	Chromatin interaction
ENSG00000089094	Chromatin interaction
ENSG00000272849	Chromatin interaction
ENSG00000139718	Chromatin interaction
ENSG00000135124	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10444489	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10444491	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10444492	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1064951	0.96[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10744763	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10744764	0.96[CEU][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10774594	0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10774595	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10774596	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10774597	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10774598	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10849873	0.93[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10849875	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10849877	0.93[CEU][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10849878	0.93[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10849879	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10849880	0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10849882	0.88[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10849884	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10849885	0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10849887	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10849889	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849891	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11065549	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065551	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065563	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065565	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065575	0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065576	0.92[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065577	0.96[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065578	0.96[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065579	0.96[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065582	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11065583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11838335	0.96[CEU][hapmap];0.81[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12427382	0.92[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12578785	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12581843	0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12581861	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2288154	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28604990	1.00[YRI][hapmap]
rs28663167	1.00[YRI][hapmap]
rs3751131	0.96[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3817543	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3817544	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3817545	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3817546	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3817547	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3817549	0.96[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3817551	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4081775	0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4980986	0.82[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4980994	0.82[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs57185007	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57889600	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57971979	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58609847	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58849369	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59103597	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59190874	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61953461	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61953462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61953497	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61955092	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61955131	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61955132	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61955138	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6489812	0.83[CEU][hapmap];0.85[AMR][1000 genomes]
rs7972181	0.82[ASN][1000 genomes]
rs9300314	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs951498	0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9634167	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9634168	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9795600	0.80[CEU][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121879200-121904000	Weak transcription	Small Intestine	intestine
2	chr12:121880000-121904000	Weak transcription	Aorta	Aorta
3	chr12:121891800-121904000	Weak transcription	Lung	lung
4	chr12:121893800-121904000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:121895600-121904000	Weak transcription	Esophagus	oesophagus
6	chr12:121902800-121904000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:121902800-121904200	Weak transcription	Gastric	stomach
8	chr12:121902800-121904200	Weak transcription	Spleen	Spleen
9	chr12:121903000-121904000	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr12:121903200-121904000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:121903200-121904000	Weak transcription	Ovary	ovary
12	chr12:121903200-121904200	Enhancers	Fetal Heart	heart
13	chr12:121903200-121904600	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr12:121903400-121904000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr12:121903400-121904000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:121903400-121904000	Flanking Active TSS	Brain Germinal Matrix	brain
17	chr12:121903400-121904000	Flanking Active TSS	Fetal Brain Female	brain
18	chr12:121903400-121904000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr12:121903400-121904200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr12:121903400-121904200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr12:121903400-121904200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
22	chr12:121903400-121904200	Flanking Active TSS	Primary B cells from peripheral blood	blood
23	chr12:121903400-121904200	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr12:121903400-121904200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr12:121903400-121904200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr12:121903400-121904200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr12:121903400-121904200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr12:121903400-121904200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr12:121903400-121904200	Flanking Active TSS	Fetal Brain Male	brain
30	chr12:121903400-121904200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr12:121903400-121904200	Transcr. at gene 5' and 3'	Dnd41	blood
32	chr12:121903400-121904200	Flanking Active TSS	HepG2	liver
33	chr12:121903400-121904200	Flanking Active TSS	K562	blood
34	chr12:121903400-121904200	Flanking Active TSS	NH-A	brain
35	chr12:121903400-121904200	Flanking Active TSS	NHEK	skin
36	chr12:121903400-121904400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr12:121903400-121904400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr12:121903400-121904600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr12:121903400-121905600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr12:121903600-121904000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr12:121903600-121904000	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr12:121903600-121904000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr12:121903600-121904000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr12:121903600-121904000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr12:121903600-121904000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr12:121903600-121904000	Flanking Active TSS	Fetal Lung	lung
47	chr12:121903600-121904000	Enhancers	Pancreas	Pancrea
48	chr12:121903600-121904000	Enhancers	Placenta Amnion	Placenta Amnion
49	chr12:121903600-121904000	Flanking Active TSS	Stomach Smooth Muscle	stomach
50	chr12:121903600-121904200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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