Variant report

Variant	rs61955138
Chromosome Location	chr12:121889294-121889295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121881127..121882674-chr12:121887819..121890318,2	MCF-7	breast:
2	chr12:121888263..121891334-chr12:121893221..121895424,3	K562	blood:
3	chr12:121878522..121880357-chr12:121889010..121890916,2	K562	blood:
4	chr12:121888904..121894167-chr12:121900825..121906643,6	K562	blood:
5	chr12:121878313..121883290-chr12:121886772..121892641,6	MCF-7	breast:
6	chr12:121880609..121882704-chr12:121889247..121891009,2	K562	blood:

Variant related genes	Relation type
ENSG00000089094	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10444489	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10444491	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10444492	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1064951	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10744763	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10744764	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10774594	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10774595	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10774596	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10774597	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10774598	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10849873	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10849875	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10849877	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10849878	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10849879	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10849880	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10849882	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10849884	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10849885	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10849887	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10849889	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10849891	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11065549	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11065551	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11065563	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11065565	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11065575	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11065576	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11065577	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11065578	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11065579	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11065582	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11065583	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11065585	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11838335	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12427382	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12578785	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12581843	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12581861	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2288154	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3751131	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3817543	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3817544	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3817545	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3817546	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3817547	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3817549	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3817551	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4081775	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4980986	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4980994	0.81[AFR][1000 genomes]
rs57185007	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57889600	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57971979	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58609847	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58849369	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59103597	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59190874	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61953461	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61953462	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61953497	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61955092	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61955131	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61955132	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6489812	0.84[AMR][1000 genomes]
rs9300314	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs951498	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9634167	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9634168	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121851800-121891400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr12:121861400-121903600	Weak transcription	Right Atrium	heart
3	chr12:121867600-121890000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:121868000-121893600	Weak transcription	Psoas Muscle	Psoas
5	chr12:121874000-121889600	Weak transcription	HMEC	breast
6	chr12:121875200-121889800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:121875200-121889800	Weak transcription	HUVEC	blood vessel
8	chr12:121877800-121889800	Weak transcription	NHDF-Ad	bronchial
9	chr12:121879200-121892400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr12:121879200-121898600	Weak transcription	HSMMtube	muscle
11	chr12:121879200-121903400	Weak transcription	Hela-S3	cervix
12	chr12:121879200-121904000	Weak transcription	Small Intestine	intestine
13	chr12:121879800-121889600	Weak transcription	Osteobl	bone
14	chr12:121879800-121889800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr12:121880000-121889400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr12:121880000-121903600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr12:121880000-121904000	Weak transcription	Aorta	Aorta
18	chr12:121880600-121889800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr12:121880800-121889800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr12:121880800-121902800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr12:121881000-121889800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr12:121881800-121903400	Weak transcription	A549	lung
23	chr12:121882400-121889400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr12:121882400-121889600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr12:121882400-121890600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr12:121882600-121889400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr12:121882600-121889600	Weak transcription	Colon Smooth Muscle	Colon
28	chr12:121882600-121890200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr12:121882800-121889800	Weak transcription	Fetal Lung	lung
30	chr12:121883000-121889800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr12:121883000-121889800	Weak transcription	Colonic Mucosa	Colon
32	chr12:121883200-121889800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr12:121883200-121889800	Weak transcription	Esophagus	oesophagus
34	chr12:121883200-121889800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr12:121883200-121889800	Weak transcription	NHEK	skin
36	chr12:121883200-121890000	Weak transcription	Pancreas	Pancrea
37	chr12:121883200-121891000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr12:121883200-121891600	Weak transcription	Brain Hippocampus Middle	brain
39	chr12:121883200-121891800	Weak transcription	Brain Substantia Nigra	brain
40	chr12:121883200-121892800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr12:121883200-121903600	Weak transcription	Brain Anterior Caudate	brain
42	chr12:121883400-121890200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr12:121883400-121892000	Weak transcription	Brain Angular Gyrus	brain
44	chr12:121883400-121893000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr12:121883400-121893800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr12:121883400-121903200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr12:121883600-121890000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr12:121883800-121889400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr12:121884600-121889800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr12:121885000-121889800	Weak transcription	NHLF	lung

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