Variant report

Variant	rs11636534
Chromosome Location	chr15:57051628-57051629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57038395..57040361-chr15:57049426..57051956,2	K562	blood:
2	chr15:57020804..57022537-chr15:57050461..57051962,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1010699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10518876	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11071294	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs11630334	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11634444	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1657928	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1657932	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1657933	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1657941	0.81[EUR][1000 genomes]
rs1657942	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1660965	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1660966	0.80[EUR][1000 genomes]
rs1680488	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs16977060	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16977067	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16977078	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2113678	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2247641	0.82[EUR][1000 genomes]
rs28463927	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28497695	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28620046	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4774890	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4774891	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs534005	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs56107629	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7164084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7175576	0.80[EUR][1000 genomes]
rs7182346	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72744977	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8031966	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs809459	0.94[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57050000-57051800	Weak transcription	Placenta	Placenta
2	chr15:57050200-57052600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr15:57050200-57052800	Enhancers	K562	blood
4	chr15:57050200-57052800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr15:57050200-57053000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:57050200-57053200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:57050400-57052600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:57050400-57053000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:57050400-57053000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:57050400-57053000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:57050400-57053000	Enhancers	NHLF	lung
12	chr15:57050400-57053200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:57050400-57053200	Enhancers	HSMM	muscle
14	chr15:57050400-57053200	Enhancers	NHDF-Ad	bronchial
15	chr15:57050600-57052600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:57050600-57053000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:57050600-57053200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:57050800-57056200	Weak transcription	Primary T cells from cord blood	blood
19	chr15:57051000-57052000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:57051000-57052200	Enhancers	Adipose Nuclei	Adipose
21	chr15:57051200-57052200	Flanking Active TSS	Osteobl	bone
22	chr15:57051200-57052600	Flanking Active TSS	NHEK	skin
23	chr15:57051400-57052000	Enhancers	Esophagus	oesophagus
24	chr15:57051400-57052200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr15:57051400-57052200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr15:57051400-57052400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr15:57051400-57052600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr15:57051400-57052600	Flanking Active TSS	NH-A	brain
29	chr15:57051400-57053200	Enhancers	Fetal Stomach	stomach
30	chr15:57051400-57055800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:57051600-57051800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:57051600-57051800	Flanking Active TSS	HMEC	breast
33	chr15:57051600-57052000	Active TSS	Primary B cells from cord blood	blood
34	chr15:57051600-57052600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:57051600-57052800	Enhancers	HSMMtube	muscle

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