Variant report

Variant	rs1657941
Chromosome Location	chr15:57097794-57097795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57089501..57091626-chr15:57095259..57098148,3	K562	blood:
2	chr15:57093337..57095465-chr15:57097017..57099531,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1010699	0.81[EUR][1000 genomes]
rs10518876	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11071294	0.92[ASN][1000 genomes]
rs11630334	0.81[EUR][1000 genomes]
rs11634444	0.81[EUR][1000 genomes]
rs11636534	0.81[EUR][1000 genomes]
rs12324492	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1627133	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1647381	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1657928	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1657932	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1657933	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1657942	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1660965	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1660966	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16977060	0.81[EUR][1000 genomes]
rs16977067	0.81[EUR][1000 genomes]
rs16977078	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2113678	0.81[EUR][1000 genomes]
rs2113679	0.93[ASN][1000 genomes]
rs2165460	1.00[ASN][1000 genomes]
rs2247641	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28463927	0.81[EUR][1000 genomes]
rs56107629	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7164084	0.81[EUR][1000 genomes]
rs7175576	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57088000-57097800	Weak transcription	Adipose Nuclei	Adipose
2	chr15:57091200-57104200	Weak transcription	Aorta	Aorta
3	chr15:57095200-57099800	Weak transcription	Thymus	Thymus
4	chr15:57095800-57098000	Enhancers	Primary B cells from peripheral blood	blood
5	chr15:57096200-57097800	Enhancers	HSMM	muscle
6	chr15:57096800-57097800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr15:57097000-57097800	Enhancers	GM12878-XiMat	blood
8	chr15:57097000-57098000	Weak transcription	Primary B cells from cord blood	blood
9	chr15:57097200-57098000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:57097200-57098000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:57097200-57098000	Enhancers	Brain Germinal Matrix	brain
12	chr15:57097200-57098600	Active TSS	Ovary	ovary
13	chr15:57097400-57097800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr15:57097400-57097800	Enhancers	Brain Angular Gyrus	brain
15	chr15:57097400-57097800	Enhancers	Hela-S3	cervix
16	chr15:57097400-57097800	Enhancers	Osteobl	bone
17	chr15:57097400-57098000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:57097400-57098000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:57097400-57098200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr15:57097400-57098600	Active TSS	Brain Anterior Caudate	brain
21	chr15:57097400-57098600	Active TSS	Brain Hippocampus Middle	brain
22	chr15:57097400-57098600	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr15:57097400-57098600	Active TSS	Brain Substantia Nigra	brain
24	chr15:57097600-57097800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr15:57097600-57097800	Enhancers	HUVEC	blood vessel
26	chr15:57097600-57097800	Enhancers	NHEK	skin
27	chr15:57097600-57098200	Enhancers	HMEC	breast
28	chr15:57097600-57098200	Flanking Active TSS	HSMMtube	muscle
29	chr15:57097600-57098400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr15:57097600-57098600	Flanking Active TSS	NH-A	brain
31	chr15:57097600-57098800	Active TSS	Brain Cingulate Gyrus	brain

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