Variant report

Variant	rs16977078
Chromosome Location	chr15:57066853-57066854
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57061117..57063691-chr15:57064747..57067595,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1010699	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10518876	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11071294	0.86[ASN][1000 genomes]
rs11630334	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11634444	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11636534	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12324492	0.80[ASN][1000 genomes]
rs1627133	0.83[ASN][1000 genomes]
rs1647381	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1657928	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1657932	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1657933	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1657941	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1657942	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1660965	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1660966	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16977060	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16977067	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2113678	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2113679	0.84[ASN][1000 genomes]
rs2165460	0.83[ASN][1000 genomes]
rs2247641	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28463927	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56107629	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7164084	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7175576	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57063400-57068000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr15:57065200-57068400	Enhancers	Fetal Thymus	thymus
3	chr15:57065200-57069000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:57065600-57067800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:57065600-57068800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:57065800-57067000	Enhancers	HSMMtube	muscle
7	chr15:57065800-57067200	Enhancers	HUVEC	blood vessel
8	chr15:57065800-57068000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:57065800-57068000	Weak transcription	NHEK	skin
10	chr15:57065800-57068200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:57065800-57068600	Enhancers	Dnd41	blood
12	chr15:57066000-57067600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:57066000-57068000	Weak transcription	Fetal Lung	lung
14	chr15:57066000-57068000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:57066000-57068600	Enhancers	Primary hematopoietic stem cells	blood
16	chr15:57066200-57067600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:57066200-57067600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:57066400-57067000	Enhancers	Primary T cells from cord blood	blood
19	chr15:57066400-57067000	Enhancers	Thymus	Thymus
20	chr15:57066400-57067000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr15:57066400-57067200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr15:57066400-57067200	Enhancers	Primary B cells from peripheral blood	blood
23	chr15:57066400-57070600	Weak transcription	Liver	Liver
24	chr15:57066600-57067200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr15:57066800-57067000	Bivalent Enhancer	K562	blood

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