Variant report

Variant	rs2165460
Chromosome Location	chr15:57095437-57095438
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57089501..57091626-chr15:57095259..57098148,3	K562	blood:
2	chr15:57093337..57095465-chr15:57097017..57099531,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10518876	0.84[ASN][1000 genomes]
rs11071294	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12324492	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1627133	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1647381	0.87[ASN][1000 genomes]
rs1657926	0.81[CHB][hapmap]
rs1657928	0.95[ASN][1000 genomes]
rs1657932	0.92[ASN][1000 genomes]
rs1657933	0.94[ASN][1000 genomes]
rs1657941	1.00[ASN][1000 genomes]
rs1657942	0.92[ASN][1000 genomes]
rs1660965	0.97[ASN][1000 genomes]
rs1660966	1.00[ASN][1000 genomes]
rs16977078	0.83[ASN][1000 genomes]
rs2113679	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2247641	0.88[ASN][1000 genomes]
rs4774891	0.83[CEU][hapmap]
rs56107629	0.83[ASN][1000 genomes]
rs7164084	0.89[CEU][hapmap]
rs7175576	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7182346	0.83[CEU][hapmap]
rs809459	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57087200-57096200	Weak transcription	HSMM	muscle
2	chr15:57088000-57097800	Weak transcription	Adipose Nuclei	Adipose
3	chr15:57091200-57097200	Weak transcription	Ovary	ovary
4	chr15:57091200-57104200	Weak transcription	Aorta	Aorta
5	chr15:57094200-57095600	Enhancers	Fetal Thymus	thymus
6	chr15:57095200-57099800	Weak transcription	Thymus	Thymus

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