Variant report

Variant	rs7164084
Chromosome Location	chr15:57036429-57036430
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57024246..57025863-chr15:57035173..57036897,2	MCF-7	breast:
2	chr15:57024390..57027645-chr15:57035934..57039963,3	K562	blood:

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1010699	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10518876	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11071294	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs11630334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11634444	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11636534	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1657928	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1657932	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1657933	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1657941	0.81[EUR][1000 genomes]
rs1657942	0.92[EUR][1000 genomes]
rs1660965	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1660966	0.80[EUR][1000 genomes]
rs1680488	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16977060	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16977067	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16977078	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2113678	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2128172	0.91[YRI][hapmap]
rs2247641	0.82[EUR][1000 genomes]
rs28463927	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28497695	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28620046	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28678122	0.82[YRI][hapmap]
rs4774890	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4774891	1.00[CEU][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs534005	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56107629	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7175576	0.80[EUR][1000 genomes]
rs7182346	1.00[CEU][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72744977	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8031966	0.94[CEU][hapmap];0.90[YRI][hapmap];0.83[EUR][1000 genomes]
rs809459	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57035000-57037200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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