Variant report

Variant	rs1010699
Chromosome Location	chr15:57050612-57050613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57038395..57040361-chr15:57049426..57051956,2	K562	blood:
2	chr15:57020804..57022537-chr15:57050461..57051962,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10518876	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11071282	0.82[GIH][hapmap];0.93[MEX][hapmap]
rs11071283	0.82[GIH][hapmap];0.93[MEX][hapmap]
rs11071294	0.83[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs11630334	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11634444	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1657928	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1657932	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1657933	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1657941	0.81[EUR][1000 genomes]
rs1657942	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1660965	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1660966	0.80[EUR][1000 genomes]
rs1680488	0.87[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs16977060	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16977067	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16977078	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2113678	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2247641	0.82[EUR][1000 genomes]
rs28463927	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28497695	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28620046	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28678122	0.82[GIH][hapmap];0.93[MEX][hapmap]
rs4774890	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4774891	0.94[CEU][hapmap];0.93[GIH][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs534005	0.89[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs56107629	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7164084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7175576	0.80[EUR][1000 genomes]
rs7182346	0.94[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72744977	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8031966	0.89[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs809459	0.94[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57042600-57051000	Weak transcription	Adipose Nuclei	Adipose
2	chr15:57047400-57051000	Weak transcription	Aorta	Aorta
3	chr15:57049600-57051400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr15:57050000-57051800	Weak transcription	Placenta	Placenta
5	chr15:57050200-57050800	Enhancers	Primary B cells from cord blood	blood
6	chr15:57050200-57051200	Enhancers	NHEK	skin
7	chr15:57050200-57051200	Enhancers	Osteobl	bone
8	chr15:57050200-57051400	Enhancers	NH-A	brain
9	chr15:57050200-57051600	Enhancers	HMEC	breast
10	chr15:57050200-57052600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr15:57050200-57052800	Enhancers	K562	blood
12	chr15:57050200-57052800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr15:57050200-57053000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr15:57050200-57053200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:57050400-57051400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr15:57050400-57051600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:57050400-57051600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:57050400-57052600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:57050400-57053000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:57050400-57053000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:57050400-57053000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:57050400-57053000	Enhancers	NHLF	lung
23	chr15:57050400-57053200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:57050400-57053200	Enhancers	HSMM	muscle
25	chr15:57050400-57053200	Enhancers	NHDF-Ad	bronchial
26	chr15:57050600-57051200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:57050600-57051200	Enhancers	HSMMtube	muscle
28	chr15:57050600-57052600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:57050600-57053000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:57050600-57053200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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