Variant report

Variant	rs1660965
Chromosome Location	chr15:57089498-57089499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1010699	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10518876	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11071282	0.93[MEX][hapmap]
rs11071283	0.93[MEX][hapmap]
rs11071294	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11630334	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11634444	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11636534	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12324492	0.90[ASN][1000 genomes]
rs1627133	0.97[ASN][1000 genomes]
rs1642929	0.82[CEU][hapmap]
rs1647381	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1657928	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1657932	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1657933	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1657941	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1657942	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1660966	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1680488	0.86[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs16977060	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16977067	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16977078	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2113678	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2113679	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2128172	0.80[YRI][hapmap]
rs2165460	0.97[ASN][1000 genomes]
rs2247641	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28463927	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28497695	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28620046	0.83[EUR][1000 genomes]
rs28678122	0.93[MEX][hapmap]
rs4774890	0.84[EUR][1000 genomes]
rs4774891	0.83[CEU][hapmap];0.89[GIH][hapmap];0.88[TSI][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs534005	0.93[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs56107629	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7164084	0.88[CEU][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7175576	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7182346	0.83[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72744977	0.84[EUR][1000 genomes]
rs8031966	0.83[GIH][hapmap];0.80[YRI][hapmap]
rs809459	0.83[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57086000-57091000	Weak transcription	Left Ventricle	heart
2	chr15:57086800-57091000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr15:57087200-57091000	Weak transcription	Aorta	Aorta
4	chr15:57087200-57096200	Weak transcription	HSMM	muscle
5	chr15:57087600-57090800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:57087800-57091000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:57088000-57097800	Weak transcription	Adipose Nuclei	Adipose
8	chr15:57089200-57090400	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links