Variant report
| Variant | rs11071294 |
|---|---|
| Chromosome Location | chr15:57077558-57077559 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000137871 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1010699 | 0.80[EUR][1000 genomes] |
| rs10518876 | 0.87[ASN][1000 genomes] |
| rs11630334 | 0.80[EUR][1000 genomes] |
| rs11634444 | 0.80[EUR][1000 genomes] |
| rs11636534 | 0.80[EUR][1000 genomes] |
| rs12324492 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1627133 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1647381 | 0.84[ASN][1000 genomes] |
| rs1657928 | 0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1657932 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1657933 | 0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1657941 | 0.92[ASN][1000 genomes] |
| rs1657942 | 0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1660965 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1660966 | 0.92[ASN][1000 genomes] |
| rs1680488 | 0.82[TSI][hapmap] |
| rs16977060 | 0.80[EUR][1000 genomes] |
| rs16977067 | 0.80[EUR][1000 genomes] |
| rs16977078 | 0.86[ASN][1000 genomes] |
| rs2113678 | 0.80[EUR][1000 genomes] |
| rs2113679 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2165460 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2247641 | 0.85[ASN][1000 genomes] |
| rs28463927 | 0.80[EUR][1000 genomes] |
| rs56107629 | 0.88[ASN][1000 genomes] |
| rs7164084 | 0.82[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs7175576 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3422474 | chr15:56867190-57244330 | Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| 2 | nsv569576 | chr15:57012816-57126917 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv833020 | chr15:57055947-57216068 | Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11071294 | MYO5C | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:57073000-57086200 | Weak transcription | Aorta | Aorta |
| 2 | chr15:57076800-57078800 | Weak transcription | K562 | blood |
| 3 | chr15:57077400-57078200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
