Variant report

Variant	rs7175576
Chromosome Location	chr15:57083006-57083007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1010699	0.80[EUR][1000 genomes]
rs10518876	0.83[ASN][1000 genomes]
rs11071294	0.84[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11630334	0.80[EUR][1000 genomes]
rs11634444	0.80[EUR][1000 genomes]
rs11636534	0.80[EUR][1000 genomes]
rs12324492	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1627133	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1647381	0.90[ASN][1000 genomes]
rs1657926	0.88[CHB][hapmap]
rs1657928	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1657932	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1657933	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1657941	0.82[ASN][1000 genomes]
rs1657942	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1660965	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1660966	0.82[ASN][1000 genomes]
rs1680488	0.82[TSI][hapmap]
rs16977060	0.80[EUR][1000 genomes]
rs16977067	0.80[EUR][1000 genomes]
rs16977078	0.82[ASN][1000 genomes]
rs2113678	0.80[EUR][1000 genomes]
rs2113679	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2165460	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2247641	0.91[ASN][1000 genomes]
rs28463927	0.80[EUR][1000 genomes]
rs56107629	0.84[ASN][1000 genomes]
rs7164084	0.82[CEU][hapmap];0.87[JPT][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7175576	MYO5C	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57073000-57086200	Weak transcription	Aorta	Aorta

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