Variant report
Variant | rs1657942 |
---|---|
Chromosome Location | chr15:57078313-57078314 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:57024297..57026872-chr15:57075507..57078884,3 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000137871 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1010699 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10518876 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11071294 | 0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11630334 | 0.92[EUR][1000 genomes] |
rs11634444 | 0.92[EUR][1000 genomes] |
rs11636534 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs12324492 | 0.84[ASN][1000 genomes] |
rs1627133 | 0.92[ASN][1000 genomes] |
rs1647381 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs1657928 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1657932 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1657933 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1657941 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1660965 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1660966 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1680488 | 0.83[EUR][1000 genomes] |
rs16977060 | 0.92[EUR][1000 genomes] |
rs16977067 | 0.92[EUR][1000 genomes] |
rs16977078 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2113678 | 0.92[EUR][1000 genomes] |
rs2113679 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2165460 | 0.92[ASN][1000 genomes] |
rs2247641 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs28463927 | 0.92[EUR][1000 genomes] |
rs28497695 | 0.85[EUR][1000 genomes] |
rs28620046 | 0.83[EUR][1000 genomes] |
rs4774890 | 0.84[EUR][1000 genomes] |
rs4774891 | 0.84[EUR][1000 genomes] |
rs534005 | 0.82[EUR][1000 genomes] |
rs56107629 | 0.80[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs7164084 | 0.92[EUR][1000 genomes] |
rs7175576 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7182346 | 0.85[EUR][1000 genomes] |
rs72744977 | 0.84[EUR][1000 genomes] |
rs809459 | 0.84[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3422474 | chr15:56867190-57244330 | Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
2 | nsv569576 | chr15:57012816-57126917 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv833020 | chr15:57055947-57216068 | Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
4 | esv3429746 | chr15:57077560-57079758 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:57073000-57086200 | Weak transcription | Aorta | Aorta |
2 | chr15:57076800-57078800 | Weak transcription | K562 | blood |