Variant report

Variant	rs1657928
Chromosome Location	chr15:57082275-57082276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1010699	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10518876	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11071294	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11630334	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11634444	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11636534	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12324492	0.84[ASN][1000 genomes]
rs1627133	0.95[ASN][1000 genomes]
rs1647381	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1657932	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1657933	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1657941	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1657942	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1660965	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1660966	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1680488	0.83[EUR][1000 genomes]
rs16977060	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16977067	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16977078	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2113678	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2113679	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2165460	0.95[ASN][1000 genomes]
rs2247641	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28463927	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28497695	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28620046	0.83[EUR][1000 genomes]
rs4774890	0.84[EUR][1000 genomes]
rs4774891	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs534005	0.82[EUR][1000 genomes]
rs56107629	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7164084	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7175576	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7182346	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72744977	0.84[EUR][1000 genomes]
rs809459	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57073000-57086200	Weak transcription	Aorta	Aorta

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