Variant report

Variant	rs11822848
Chromosome Location	chr11:94484431-94484432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94483272..94485191-chr11:94565450..94567778,2	K562	blood:
2	chr11:94481658..94484650-chr11:94485493..94488395,3	K562	blood:
3	chr11:94479303..94480955-chr11:94482711..94484457,2	K562	blood:
4	chr11:94482812..94484558-chr11:94486237..94489066,2	MCF-7	breast:
5	chr11:94482898..94485322-chr11:94492932..94494855,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10831260	1.00[EUR][1000 genomes]
rs11020882	1.00[EUR][1000 genomes]
rs11020883	1.00[EUR][1000 genomes]
rs11020908	1.00[EUR][1000 genomes]
rs11824118	1.00[EUR][1000 genomes]
rs11825607	1.00[EUR][1000 genomes]
rs12279532	1.00[EUR][1000 genomes]
rs12280828	1.00[EUR][1000 genomes]
rs12283173	1.00[EUR][1000 genomes]
rs12289001	1.00[EUR][1000 genomes]
rs12292410	1.00[EUR][1000 genomes]
rs12295478	1.00[EUR][1000 genomes]
rs16920778	1.00[EUR][1000 genomes]
rs16920838	1.00[EUR][1000 genomes]
rs16921041	1.00[EUR][1000 genomes]
rs16921045	1.00[EUR][1000 genomes]
rs16921099	1.00[EUR][1000 genomes]
rs1940641	1.00[EUR][1000 genomes]
rs4382867	1.00[EUR][1000 genomes]
rs56129264	1.00[EUR][1000 genomes]
rs57727006	1.00[EUR][1000 genomes]
rs60199624	1.00[EUR][1000 genomes]
rs61356209	1.00[EUR][1000 genomes]
rs7104173	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7111545	1.00[EUR][1000 genomes]
rs7112716	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7350531	1.00[EUR][1000 genomes]
rs7936338	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832234	chr11:94462190-94611845	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898186	chr11:94463093-94611845	Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94474600-94487000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:94474800-94497200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:94475600-94485000	Weak transcription	Fetal Stomach	stomach
4	chr11:94475600-94485800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:94479000-94487800	Enhancers	Placenta	Placenta
6	chr11:94479200-94484600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr11:94479200-94485800	Enhancers	Stomach Mucosa	stomach
8	chr11:94479200-94488600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:94479600-94487200	Enhancers	HMEC	breast
10	chr11:94479800-94485400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:94480600-94487400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:94481000-94484600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:94481000-94485000	Weak transcription	HSMM	muscle
14	chr11:94481200-94485000	Weak transcription	NHLF	lung
15	chr11:94482400-94485400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:94482600-94485200	Enhancers	HUVEC	blood vessel
17	chr11:94482600-94486400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:94483000-94485600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:94483000-94485600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr11:94483000-94486400	Enhancers	A549	lung
21	chr11:94483200-94484600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:94483200-94489600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:94483400-94486000	Enhancers	NHDF-Ad	bronchial
24	chr11:94483600-94484800	Enhancers	Right Ventricle	heart
25	chr11:94483600-94485000	Enhancers	Colon Smooth Muscle	Colon
26	chr11:94483600-94485200	Enhancers	K562	blood
27	chr11:94483600-94485800	Enhancers	Osteobl	bone
28	chr11:94483600-94486200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr11:94483800-94484800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:94483800-94484800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:94483800-94484800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:94483800-94484800	Weak transcription	Left Ventricle	heart
33	chr11:94483800-94484800	Weak transcription	Pancreas	Pancrea
34	chr11:94483800-94484800	Flanking Active TSS	NHEK	skin
35	chr11:94483800-94485400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:94483800-94485400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:94483800-94485600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:94483800-94486000	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr11:94483800-94487000	Weak transcription	Spleen	Spleen
40	chr11:94483800-94488000	Weak transcription	Lung	lung
41	chr11:94483800-94488800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:94483800-94489000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:94483800-94491600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:94484000-94484800	Weak transcription	Psoas Muscle	Psoas
45	chr11:94484000-94485400	Weak transcription	Fetal Muscle Leg	muscle
46	chr11:94484000-94485600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:94484000-94486400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:94484000-94486400	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr11:94484000-94500600	Weak transcription	Esophagus	oesophagus
50	chr11:94484200-94484600	Active TSS	Right Atrium	heart

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