Variant report

Variant	rs11824118
Chromosome Location	chr11:94518743-94518744
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94515295..94517521-chr11:94518500..94520793,2	K562	blood:
2	chr11:94516686..94519560-chr11:94706482..94708097,2	MCF-7	breast:
3	chr11:94512767..94515451-chr11:94518485..94521279,3	K562	blood:
4	chr11:94507601..94509221-chr11:94516865..94518986,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150316	Chromatin interaction
ENSG00000186280	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10831260	1.00[EUR][1000 genomes]
rs11020882	1.00[EUR][1000 genomes]
rs11020883	1.00[EUR][1000 genomes]
rs11020908	1.00[EUR][1000 genomes]
rs11822848	1.00[EUR][1000 genomes]
rs11825607	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279532	1.00[EUR][1000 genomes]
rs12280828	1.00[EUR][1000 genomes]
rs12283173	1.00[EUR][1000 genomes]
rs12289001	1.00[EUR][1000 genomes]
rs12292410	1.00[EUR][1000 genomes]
rs12295478	1.00[EUR][1000 genomes]
rs16920778	1.00[EUR][1000 genomes]
rs16920838	1.00[EUR][1000 genomes]
rs16921041	1.00[EUR][1000 genomes]
rs16921045	1.00[EUR][1000 genomes]
rs16921099	1.00[EUR][1000 genomes]
rs1940641	1.00[EUR][1000 genomes]
rs4382867	1.00[EUR][1000 genomes]
rs56129264	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57727006	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60199624	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61356209	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104173	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7111545	1.00[EUR][1000 genomes]
rs7112716	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7350531	1.00[EUR][1000 genomes]
rs7936338	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832234	chr11:94462190-94611845	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898186	chr11:94463093-94611845	Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94503400-94534000	Weak transcription	Brain Substantia Nigra	brain
2	chr11:94510000-94518800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:94510000-94518800	Weak transcription	Lung	lung
4	chr11:94510000-94518800	Weak transcription	Pancreas	Pancrea
5	chr11:94510000-94521200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:94510000-94521600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:94510000-94527400	Weak transcription	Esophagus	oesophagus
8	chr11:94510000-94532800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:94510200-94523800	Weak transcription	Fetal Brain Female	brain
10	chr11:94510400-94521400	Weak transcription	A549	lung
11	chr11:94510600-94519600	Weak transcription	Liver	Liver
12	chr11:94510600-94520000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:94510600-94521200	Weak transcription	HSMMtube	muscle
14	chr11:94512000-94522600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:94513200-94521000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:94513400-94521400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:94513600-94521000	Weak transcription	Right Atrium	heart
18	chr11:94514000-94521200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:94514200-94518800	Weak transcription	Fetal Kidney	kidney
20	chr11:94514200-94527000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:94514200-94527200	Enhancers	NHDF-Ad	bronchial
22	chr11:94514400-94521600	Weak transcription	Fetal Stomach	stomach
23	chr11:94514400-94522200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:94514600-94518800	Weak transcription	Left Ventricle	heart
25	chr11:94514600-94519400	Weak transcription	Fetal Thymus	thymus
26	chr11:94514600-94520000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:94514600-94520000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:94514600-94521000	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:94514600-94521000	Weak transcription	Ovary	ovary
30	chr11:94514600-94521000	Weak transcription	Small Intestine	intestine
31	chr11:94514600-94522600	Weak transcription	Aorta	Aorta
32	chr11:94514800-94521200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:94515400-94519000	Weak transcription	NH-A	brain
34	chr11:94515400-94521200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr11:94515600-94519000	Enhancers	Colon Smooth Muscle	Colon
36	chr11:94515600-94521600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:94515800-94520000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:94515800-94521200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr11:94515800-94527600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:94516200-94521800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:94516200-94522600	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr11:94516600-94518800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:94516600-94519400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:94516600-94521000	Enhancers	Rectal Smooth Muscle	rectum
45	chr11:94516600-94521400	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr11:94516600-94523400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:94517200-94520000	Weak transcription	NHEK	skin
48	chr11:94517400-94518800	Weak transcription	K562	blood
49	chr11:94517800-94519600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:94517800-94519800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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