Variant report

Variant	rs16921041
Chromosome Location	chr11:94546603-94546604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10831260	1.00[EUR][1000 genomes]
rs11020882	1.00[EUR][1000 genomes]
rs11020883	1.00[EUR][1000 genomes]
rs11020908	1.00[EUR][1000 genomes]
rs11822848	1.00[EUR][1000 genomes]
rs11824118	1.00[EUR][1000 genomes]
rs11825607	1.00[EUR][1000 genomes]
rs12279532	1.00[EUR][1000 genomes]
rs12280828	1.00[EUR][1000 genomes]
rs12283173	1.00[EUR][1000 genomes]
rs12289001	1.00[EUR][1000 genomes]
rs12292410	1.00[EUR][1000 genomes]
rs12295478	1.00[EUR][1000 genomes]
rs16920778	1.00[EUR][1000 genomes]
rs16920838	1.00[EUR][1000 genomes]
rs16921045	1.00[EUR][1000 genomes]
rs16921099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1940641	1.00[EUR][1000 genomes]
rs4382867	1.00[EUR][1000 genomes]
rs56129264	1.00[EUR][1000 genomes]
rs57727006	1.00[EUR][1000 genomes]
rs60199624	1.00[EUR][1000 genomes]
rs61356209	1.00[EUR][1000 genomes]
rs7104173	1.00[EUR][1000 genomes]
rs7111545	1.00[EUR][1000 genomes]
rs7112716	1.00[EUR][1000 genomes]
rs7350531	1.00[EUR][1000 genomes]
rs7936338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832234	chr11:94462190-94611845	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898186	chr11:94463093-94611845	Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94526800-94547400	Weak transcription	Fetal Brain Male	brain
2	chr11:94531200-94555600	Weak transcription	K562	blood
3	chr11:94534800-94547800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:94536200-94555000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:94536200-94557800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:94536400-94552400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:94536600-94547400	Weak transcription	Fetal Intestine Small	intestine
8	chr11:94539600-94558200	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:94539800-94553400	Weak transcription	Ovary	ovary
10	chr11:94540000-94567800	Weak transcription	Brain Angular Gyrus	brain
11	chr11:94541600-94548000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr11:94542200-94547400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:94542800-94553400	Weak transcription	Gastric	stomach
14	chr11:94542800-94554200	Weak transcription	Right Ventricle	heart
15	chr11:94542800-94554400	Weak transcription	Pancreas	Pancrea
16	chr11:94542800-94554400	Weak transcription	Right Atrium	heart
17	chr11:94542800-94557600	Weak transcription	Brain Anterior Caudate	brain
18	chr11:94543600-94546800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:94544200-94548200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:94544800-94546800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:94545000-94547400	Strong transcription	Fetal Muscle Leg	muscle
22	chr11:94545200-94546800	Strong transcription	Fetal Brain Female	brain
23	chr11:94545200-94547400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:94545200-94547400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr11:94545200-94547600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:94545200-94548000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:94545200-94548200	Strong transcription	HMEC	breast
28	chr11:94545200-94565000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:94545400-94547000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:94545600-94555200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:94546000-94547800	Strong transcription	Fetal Stomach	stomach
32	chr11:94546000-94553800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:94546200-94546800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:94546200-94546800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:94546200-94546800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:94546200-94546800	Genic enhancers	Liver	Liver
37	chr11:94546200-94546800	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr11:94546200-94546800	Genic enhancers	Colon Smooth Muscle	Colon
39	chr11:94546200-94547000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr11:94546200-94547200	Genic enhancers	Placenta	Placenta
41	chr11:94546200-94547200	Genic enhancers	NH-A	brain
42	chr11:94546200-94547400	Strong transcription	Primary hematopoietic stem cells	blood
43	chr11:94546200-94547400	Strong transcription	Left Ventricle	heart
44	chr11:94546200-94547400	Genic enhancers	Stomach Smooth Muscle	stomach
45	chr11:94546200-94547600	Strong transcription	A549	lung
46	chr11:94546200-94547800	Strong transcription	Thymus	Thymus
47	chr11:94546200-94547800	Genic enhancers	HSMM	muscle
48	chr11:94546200-94548000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:94546200-94548000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:94546200-94548000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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