Variant report

Variant	rs16921099
Chromosome Location	chr11:94583977-94583978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94568012..94571031-chr11:94581090..94584530,3	K562	blood:
2	chr11:94583015..94584741-chr11:94611903..94613788,2	MCF-7	breast:
3	chr11:94568012..94571031-chr11:94581090..94584530,4	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10831260	1.00[EUR][1000 genomes]
rs11020882	1.00[EUR][1000 genomes]
rs11020883	1.00[EUR][1000 genomes]
rs11020908	1.00[EUR][1000 genomes]
rs11822848	1.00[EUR][1000 genomes]
rs11824118	1.00[EUR][1000 genomes]
rs11825607	1.00[EUR][1000 genomes]
rs12279532	1.00[EUR][1000 genomes]
rs12280828	1.00[EUR][1000 genomes]
rs12283173	1.00[EUR][1000 genomes]
rs12289001	1.00[EUR][1000 genomes]
rs12292410	1.00[EUR][1000 genomes]
rs12295478	1.00[EUR][1000 genomes]
rs16920778	1.00[EUR][1000 genomes]
rs16920838	1.00[EUR][1000 genomes]
rs16921041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16921045	1.00[EUR][1000 genomes]
rs1940641	1.00[EUR][1000 genomes]
rs4382867	1.00[EUR][1000 genomes]
rs56129264	1.00[EUR][1000 genomes]
rs57727006	1.00[EUR][1000 genomes]
rs60199624	1.00[EUR][1000 genomes]
rs61356209	1.00[EUR][1000 genomes]
rs7104173	1.00[EUR][1000 genomes]
rs7111545	1.00[EUR][1000 genomes]
rs7112716	1.00[EUR][1000 genomes]
rs7350531	1.00[EUR][1000 genomes]
rs7936338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832234	chr11:94462190-94611845	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898186	chr11:94463093-94611845	Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94547000-94597800	Weak transcription	Small Intestine	intestine
2	chr11:94551800-94599400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:94552200-94586800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:94555400-94599200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:94556200-94597800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:94558600-94587000	Weak transcription	Brain Substantia Nigra	brain
7	chr11:94561200-94609400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:94562200-94597600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:94562600-94588400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:94563800-94586800	Weak transcription	Spleen	Spleen
11	chr11:94563800-94587000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:94565400-94586800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:94566200-94589800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:94566400-94587400	Strong transcription	Placenta	Placenta
15	chr11:94567000-94587000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:94567200-94587000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:94567200-94588600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:94567200-94590800	Weak transcription	K562	blood
19	chr11:94568800-94587000	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:94569000-94587200	Weak transcription	Brain Angular Gyrus	brain
21	chr11:94569600-94587000	Weak transcription	Hela-S3	cervix
22	chr11:94570400-94590400	Weak transcription	Primary B cells from cord blood	blood
23	chr11:94571800-94587000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:94572600-94587000	Weak transcription	Right Ventricle	heart
25	chr11:94572600-94587200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:94572800-94587000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:94572800-94587200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:94573000-94587000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:94573600-94586600	Weak transcription	HUVEC	blood vessel
30	chr11:94576600-94585800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:94576800-94587600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:94579400-94587400	Weak transcription	Right Atrium	heart
33	chr11:94579400-94587400	Weak transcription	A549	lung
34	chr11:94579400-94610600	Weak transcription	Stomach Mucosa	stomach
35	chr11:94579600-94584800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr11:94579600-94587000	Weak transcription	Gastric	stomach
37	chr11:94579800-94584000	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:94579800-94587000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:94579800-94587000	Weak transcription	NHLF	lung
40	chr11:94579800-94596000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr11:94580200-94586000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:94581000-94595200	Strong transcription	Fetal Lung	lung
43	chr11:94581000-94597600	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:94581400-94587200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:94581400-94587200	Weak transcription	Brain Anterior Caudate	brain
46	chr11:94581400-94592400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
47	chr11:94581400-94594400	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:94581600-94608000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr11:94581600-94609400	Weak transcription	Colonic Mucosa	Colon
50	chr11:94582600-94585200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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