Variant report

Variant	rs7112716
Chromosome Location	chr11:94516072-94516073
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94515295..94517521-chr11:94518500..94520793,2	K562	blood:
2	chr11:94500289..94503698-chr11:94515090..94517925,4	K562	blood:
3	chr11:94511742..94514553-chr11:94515398..94518558,3	K562	blood:
4	chr11:94506655..94509597-chr11:94512174..94516292,5	K562	blood:

Variant related genes	Relation type
ENSG00000166025	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10831260	1.00[EUR][1000 genomes]
rs11020882	1.00[EUR][1000 genomes]
rs11020883	1.00[EUR][1000 genomes]
rs11020908	1.00[EUR][1000 genomes]
rs11822848	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824118	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11825607	1.00[EUR][1000 genomes]
rs12279532	1.00[EUR][1000 genomes]
rs12280828	1.00[EUR][1000 genomes]
rs12283173	1.00[EUR][1000 genomes]
rs12289001	1.00[EUR][1000 genomes]
rs12292410	1.00[EUR][1000 genomes]
rs12295478	1.00[EUR][1000 genomes]
rs16920778	1.00[EUR][1000 genomes]
rs16920838	1.00[EUR][1000 genomes]
rs16921041	1.00[EUR][1000 genomes]
rs16921045	1.00[EUR][1000 genomes]
rs16921099	1.00[EUR][1000 genomes]
rs1940641	1.00[EUR][1000 genomes]
rs4382867	1.00[EUR][1000 genomes]
rs56129264	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57727006	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60199624	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61356209	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7104173	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7111545	1.00[EUR][1000 genomes]
rs7350531	1.00[EUR][1000 genomes]
rs7936338	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832234	chr11:94462190-94611845	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898186	chr11:94463093-94611845	Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94503400-94534000	Weak transcription	Brain Substantia Nigra	brain
2	chr11:94510000-94516400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:94510000-94517000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:94510000-94517800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:94510000-94518000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:94510000-94518200	Weak transcription	Fetal Brain Male	brain
7	chr11:94510000-94518600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:94510000-94518800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:94510000-94518800	Weak transcription	Lung	lung
10	chr11:94510000-94518800	Weak transcription	Pancreas	Pancrea
11	chr11:94510000-94521200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:94510000-94521600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:94510000-94527400	Weak transcription	Esophagus	oesophagus
14	chr11:94510000-94532800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:94510200-94516800	Weak transcription	Brain Anterior Caudate	brain
16	chr11:94510200-94517800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:94510200-94518000	Weak transcription	Brain Germinal Matrix	brain
18	chr11:94510200-94518200	Weak transcription	Stomach Mucosa	stomach
19	chr11:94510200-94523800	Weak transcription	Fetal Brain Female	brain
20	chr11:94510400-94521400	Weak transcription	A549	lung
21	chr11:94510600-94519600	Weak transcription	Liver	Liver
22	chr11:94510600-94520000	Weak transcription	Fetal Intestine Small	intestine
23	chr11:94510600-94521200	Weak transcription	HSMMtube	muscle
24	chr11:94512000-94522600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:94513200-94516600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr11:94513200-94517000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr11:94513200-94517600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:94513200-94521000	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr11:94513400-94521400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:94513600-94516800	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr11:94513600-94521000	Weak transcription	Right Atrium	heart
32	chr11:94514000-94516200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr11:94514000-94517600	Enhancers	Osteobl	bone
34	chr11:94514000-94518400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:94514000-94521200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:94514200-94516200	Weak transcription	K562	blood
37	chr11:94514200-94517000	Enhancers	Adipose Nuclei	Adipose
38	chr11:94514200-94518800	Weak transcription	Fetal Kidney	kidney
39	chr11:94514200-94527000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr11:94514200-94527200	Enhancers	NHDF-Ad	bronchial
41	chr11:94514400-94516600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:94514400-94517200	Enhancers	NHEK	skin
43	chr11:94514400-94521600	Weak transcription	Fetal Stomach	stomach
44	chr11:94514400-94522200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:94514600-94516200	Weak transcription	Psoas Muscle	Psoas
46	chr11:94514600-94516600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:94514600-94516800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:94514600-94517800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:94514600-94518200	Weak transcription	HUVEC	blood vessel
50	chr11:94514600-94518800	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links