Variant report

Variant	rs7936338
Chromosome Location	chr11:94510220-94510221
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94495433..94498495-chr11:94507067..94510353,4	K562	blood:
2	chr11:94500437..94505978-chr11:94508795..94512883,5	K562	blood:
3	chr11:94501495..94504597-chr11:94508112..94511006,3	MCF-7	breast:
4	chr11:94505992..94508155-chr11:94508827..94511021,2	K562	blood:
5	chr11:94501260..94503156-chr11:94508492..94510487,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166025	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10831260	1.00[EUR][1000 genomes]
rs11020882	1.00[EUR][1000 genomes]
rs11020883	1.00[EUR][1000 genomes]
rs11020908	1.00[EUR][1000 genomes]
rs11822848	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824118	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11825607	1.00[EUR][1000 genomes]
rs12279532	1.00[EUR][1000 genomes]
rs12280828	1.00[EUR][1000 genomes]
rs12283173	1.00[EUR][1000 genomes]
rs12289001	1.00[EUR][1000 genomes]
rs12292410	1.00[EUR][1000 genomes]
rs12295478	1.00[EUR][1000 genomes]
rs16920778	1.00[EUR][1000 genomes]
rs16920838	1.00[EUR][1000 genomes]
rs16921041	1.00[EUR][1000 genomes]
rs16921045	1.00[EUR][1000 genomes]
rs16921099	1.00[EUR][1000 genomes]
rs1940641	1.00[EUR][1000 genomes]
rs4382867	1.00[EUR][1000 genomes]
rs56129264	1.00[EUR][1000 genomes]
rs57727006	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60199624	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61356209	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7104173	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7111545	1.00[EUR][1000 genomes]
rs7112716	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7350531	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832234	chr11:94462190-94611845	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898186	chr11:94463093-94611845	Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94503400-94513600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:94503400-94534000	Weak transcription	Brain Substantia Nigra	brain
3	chr11:94505600-94513400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:94506600-94510600	Enhancers	Psoas Muscle	Psoas
5	chr11:94506600-94510600	Enhancers	Rectal Smooth Muscle	rectum
6	chr11:94506600-94511200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr11:94506800-94511400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:94507800-94513200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:94508400-94510400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:94508600-94510400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:94508800-94510600	Enhancers	Fetal Lung	lung
12	chr11:94509000-94510600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr11:94509000-94510600	Enhancers	Fetal Thymus	thymus
14	chr11:94509000-94510600	Enhancers	HSMMtube	muscle
15	chr11:94509000-94510600	Enhancers	NHDF-Ad	bronchial
16	chr11:94509200-94510400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr11:94509200-94510400	Enhancers	HUVEC	blood vessel
18	chr11:94509200-94510600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:94509200-94510600	Enhancers	Fetal Intestine Small	intestine
20	chr11:94509200-94510600	Enhancers	NH-A	brain
21	chr11:94509400-94510400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr11:94509400-94510400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr11:94509400-94510400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr11:94509400-94510400	Enhancers	A549	lung
25	chr11:94509400-94510400	Enhancers	NHLF	lung
26	chr11:94509400-94510600	Enhancers	Osteobl	bone
27	chr11:94509400-94513600	Weak transcription	Primary T cells from cord blood	blood
28	chr11:94509600-94510400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:94509600-94510800	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr11:94509600-94511200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:94509600-94513400	Weak transcription	Fetal Kidney	kidney
32	chr11:94509600-94513400	Weak transcription	Ovary	ovary
33	chr11:94509800-94513400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:94510000-94510400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:94510000-94510400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:94510000-94510600	Enhancers	Muscle Satellite Cultured Cells	--
37	chr11:94510000-94510600	Enhancers	HMEC	breast
38	chr11:94510000-94510600	Enhancers	K562	blood
39	chr11:94510000-94510600	Enhancers	NHEK	skin
40	chr11:94510000-94511000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:94510000-94511200	Enhancers	Hela-S3	cervix
42	chr11:94510000-94511600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:94510000-94511800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:94510000-94511800	Weak transcription	Gastric	stomach
45	chr11:94510000-94512200	Enhancers	Colon Smooth Muscle	Colon
46	chr11:94510000-94512200	Weak transcription	Right Ventricle	heart
47	chr11:94510000-94513200	Weak transcription	Right Atrium	heart
48	chr11:94510000-94513400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:94510000-94513400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:94510000-94513400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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