Variant report

Variant	rs11825607
Chromosome Location	chr11:94556220-94556221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94500621..94503401-chr11:94555928..94558035,2	K562	blood:

Variant related genes	Relation type
ENSG00000166025	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10831260	1.00[EUR][1000 genomes]
rs11020882	1.00[EUR][1000 genomes]
rs11020883	1.00[EUR][1000 genomes]
rs11020908	1.00[EUR][1000 genomes]
rs11822848	1.00[EUR][1000 genomes]
rs11824118	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279532	1.00[EUR][1000 genomes]
rs12280828	1.00[EUR][1000 genomes]
rs12283173	1.00[EUR][1000 genomes]
rs12289001	1.00[EUR][1000 genomes]
rs12292410	1.00[EUR][1000 genomes]
rs12295478	1.00[EUR][1000 genomes]
rs16920778	1.00[EUR][1000 genomes]
rs16920838	1.00[EUR][1000 genomes]
rs16921041	1.00[EUR][1000 genomes]
rs16921045	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16921099	1.00[EUR][1000 genomes]
rs1940641	1.00[EUR][1000 genomes]
rs4382867	1.00[EUR][1000 genomes]
rs56129264	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57727006	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60199624	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61356209	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104173	1.00[ASW][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[EUR][1000 genomes]
rs7111545	1.00[EUR][1000 genomes]
rs7112716	1.00[EUR][1000 genomes]
rs7350531	1.00[EUR][1000 genomes]
rs7936338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832234	chr11:94462190-94611845	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898186	chr11:94463093-94611845	Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94536200-94557800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:94539600-94558200	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:94540000-94567800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:94542800-94557600	Weak transcription	Brain Anterior Caudate	brain
5	chr11:94545200-94565000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:94546800-94557600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:94547000-94563200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:94547000-94597800	Weak transcription	Small Intestine	intestine
9	chr11:94547800-94561000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:94547800-94570000	Weak transcription	Primary B cells from cord blood	blood
11	chr11:94548200-94579200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:94549600-94558600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:94549800-94572800	Strong transcription	HSMM	muscle
14	chr11:94550000-94559400	Weak transcription	Fetal Brain Male	brain
15	chr11:94550800-94568000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:94550800-94568200	Weak transcription	A549	lung
17	chr11:94551200-94557800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:94551400-94566000	Strong transcription	Placenta	Placenta
19	chr11:94551600-94574200	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:94551800-94557400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:94551800-94599400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:94552000-94562600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:94552200-94559600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:94552200-94586800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:94552400-94567800	Strong transcription	Fetal Muscle Leg	muscle
26	chr11:94552600-94558400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:94552600-94563600	Strong transcription	Fetal Lung	lung
28	chr11:94552600-94568000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:94552800-94556600	Strong transcription	Aorta	Aorta
30	chr11:94552800-94556600	Strong transcription	Esophagus	oesophagus
31	chr11:94552800-94567400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:94552800-94567600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:94552800-94567800	Strong transcription	Fetal Stomach	stomach
34	chr11:94553200-94567200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:94553400-94556400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:94553400-94557600	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:94553400-94557600	Strong transcription	Stomach Smooth Muscle	stomach
38	chr11:94553400-94559000	Strong transcription	NHLF	lung
39	chr11:94553400-94559600	Strong transcription	Liver	Liver
40	chr11:94553400-94560800	Strong transcription	Fetal Intestine Small	intestine
41	chr11:94553400-94561200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:94553400-94566400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:94553400-94567200	Strong transcription	Fetal Muscle Trunk	muscle
44	chr11:94553400-94567800	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:94553400-94567800	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr11:94553400-94570600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:94553600-94557400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:94553600-94559600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:94553600-94565200	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr11:94553800-94559200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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