Variant report

Variant	rs12280828
Chromosome Location	chr11:94400004-94400005
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94393858..94398288-chr11:94398504..94402115,4	K562	blood:
2	chr11:94368321..94373611-chr11:94398566..94402390,4	K562	blood:
3	chr11:94396012..94398288-chr11:94399899..94402115,2	K562	blood:

Variant related genes	Relation type
ENSG00000233536	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10160578	1.00[AMR][1000 genomes]
rs10831260	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020908	1.00[EUR][1000 genomes]
rs11574856	1.00[EUR][1000 genomes]
rs11822848	1.00[EUR][1000 genomes]
rs11824118	1.00[EUR][1000 genomes]
rs11825607	1.00[EUR][1000 genomes]
rs12277165	1.00[AMR][1000 genomes]
rs12279037	1.00[AMR][1000 genomes]
rs12279532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12283173	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12289001	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292410	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295478	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16920778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16920838	1.00[EUR][1000 genomes]
rs16921041	1.00[EUR][1000 genomes]
rs16921045	1.00[EUR][1000 genomes]
rs16921099	1.00[EUR][1000 genomes]
rs1940641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4382867	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs56129264	1.00[EUR][1000 genomes]
rs57727006	1.00[EUR][1000 genomes]
rs60199624	1.00[EUR][1000 genomes]
rs61356209	1.00[EUR][1000 genomes]
rs7104173	1.00[EUR][1000 genomes]
rs7111545	1.00[EUR][1000 genomes]
rs7112716	1.00[EUR][1000 genomes]
rs7350531	1.00[EUR][1000 genomes]
rs7936338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3356576	chr11:94396904-94400502	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94384600-94404600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:94391000-94404600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:94395400-94410800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:94396000-94404600	Weak transcription	Gastric	stomach
5	chr11:94396400-94404600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:94396800-94400600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:94397000-94400400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:94397800-94403600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:94398000-94401000	Weak transcription	Esophagus	oesophagus
10	chr11:94398000-94404200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:94398000-94404400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:94398200-94402000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:94398600-94403800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:94398600-94404800	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:94398800-94401800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:94399000-94402000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr11:94399000-94402200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:94399000-94404400	Weak transcription	HMEC	breast
19	chr11:94399200-94400600	Weak transcription	Placenta	Placenta
20	chr11:94399400-94401800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:94399600-94400200	Weak transcription	K562	blood
22	chr11:94400000-94400200	Enhancers	Pancreas	Pancrea
23	chr11:94400000-94402000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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