Variant report

Variant	rs57727006
Chromosome Location	chr11:94524034-94524035
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94519496..94521410-chr11:94523709..94527083,3	K562	blood:
2	chr11:94499889..94502550-chr11:94523612..94526415,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIWIL4-6	chr11:94523351-94524560	ucscGeneNc_uc001pfi_1

Variant related genes	Relation type
ENSG00000166025	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10831260	1.00[EUR][1000 genomes]
rs11020882	1.00[EUR][1000 genomes]
rs11020883	1.00[EUR][1000 genomes]
rs11020908	1.00[EUR][1000 genomes]
rs11822848	1.00[EUR][1000 genomes]
rs11824118	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825607	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279532	1.00[EUR][1000 genomes]
rs12280828	1.00[EUR][1000 genomes]
rs12283173	1.00[EUR][1000 genomes]
rs12289001	1.00[EUR][1000 genomes]
rs12292410	1.00[EUR][1000 genomes]
rs12295478	1.00[EUR][1000 genomes]
rs16920778	1.00[EUR][1000 genomes]
rs16920838	1.00[EUR][1000 genomes]
rs16921041	1.00[EUR][1000 genomes]
rs16921045	1.00[EUR][1000 genomes]
rs16921099	1.00[EUR][1000 genomes]
rs1940641	1.00[EUR][1000 genomes]
rs4382867	1.00[EUR][1000 genomes]
rs56129264	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60199624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61356209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104173	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7111545	1.00[EUR][1000 genomes]
rs7112716	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7350531	1.00[EUR][1000 genomes]
rs7936338	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832234	chr11:94462190-94611845	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898186	chr11:94463093-94611845	Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94503400-94534000	Weak transcription	Brain Substantia Nigra	brain
2	chr11:94510000-94527400	Weak transcription	Esophagus	oesophagus
3	chr11:94510000-94532800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:94514200-94527000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:94514200-94527200	Enhancers	NHDF-Ad	bronchial
6	chr11:94515800-94527600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:94518400-94526400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:94518400-94527400	Weak transcription	Stomach Mucosa	stomach
9	chr11:94519000-94527400	Weak transcription	Brain Anterior Caudate	brain
10	chr11:94519000-94532600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:94519000-94535800	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:94519200-94530800	Weak transcription	Brain Germinal Matrix	brain
13	chr11:94519200-94532200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:94519200-94532400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:94519400-94527600	Enhancers	K562	blood
16	chr11:94519400-94527800	Enhancers	HMEC	breast
17	chr11:94519400-94528600	Enhancers	Fetal Thymus	thymus
18	chr11:94519600-94529400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:94519800-94524600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:94519800-94532400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:94519800-94532600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:94520000-94526400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:94520200-94527200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:94520400-94525200	Enhancers	NHLF	lung
25	chr11:94520400-94526200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:94520400-94527000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:94520400-94529800	Enhancers	Pancreas	Pancrea
28	chr11:94521000-94524200	Enhancers	Left Ventricle	heart
29	chr11:94521000-94524600	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:94521000-94525000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:94521000-94525200	Enhancers	Psoas Muscle	Psoas
32	chr11:94521000-94526200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:94521000-94527200	Enhancers	Osteobl	bone
34	chr11:94521200-94524600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:94521200-94524600	Enhancers	HSMMtube	muscle
36	chr11:94521200-94526600	Enhancers	NH-A	brain
37	chr11:94521200-94526800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:94521200-94528400	Genic enhancers	NHEK	skin
39	chr11:94521400-94524800	Enhancers	HSMM	muscle
40	chr11:94521400-94525400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:94521400-94527400	Weak transcription	Gastric	stomach
42	chr11:94521800-94524600	Enhancers	Fetal Intestine Large	intestine
43	chr11:94521800-94524600	Weak transcription	Ovary	ovary
44	chr11:94521800-94524800	Enhancers	Fetal Intestine Small	intestine
45	chr11:94521800-94525800	Weak transcription	Right Ventricle	heart
46	chr11:94521800-94525800	Weak transcription	Spleen	Spleen
47	chr11:94521800-94526000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:94521800-94526200	Weak transcription	Liver	Liver
49	chr11:94521800-94526800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr11:94521800-94527200	Weak transcription	Brain Angular Gyrus	brain

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