Variant report

Variant	rs12283173
Chromosome Location	chr11:94395847-94395848
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94393858..94398288-chr11:94398504..94402115,4	K562	blood:

rs_ID	r²[population]
rs10831260	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11020882	1.00[EUR][1000 genomes]
rs11020883	1.00[EUR][1000 genomes]
rs11020908	1.00[EUR][1000 genomes]
rs11574856	1.00[EUR][1000 genomes]
rs11822848	1.00[EUR][1000 genomes]
rs11824118	1.00[EUR][1000 genomes]
rs11825607	1.00[EUR][1000 genomes]
rs12279532	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12280828	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12289001	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12292410	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12295478	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16920778	1.00[EUR][1000 genomes]
rs16920838	1.00[EUR][1000 genomes]
rs16921041	1.00[EUR][1000 genomes]
rs16921045	1.00[EUR][1000 genomes]
rs16921099	1.00[EUR][1000 genomes]
rs1940641	1.00[EUR][1000 genomes]
rs4382867	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs56129264	1.00[EUR][1000 genomes]
rs57727006	1.00[EUR][1000 genomes]
rs60199624	1.00[EUR][1000 genomes]
rs61356209	1.00[EUR][1000 genomes]
rs7104173	1.00[EUR][1000 genomes]
rs7111545	1.00[EUR][1000 genomes]
rs7112716	1.00[EUR][1000 genomes]
rs7350531	1.00[EUR][1000 genomes]
rs7936338	1.00[EUR][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94384600-94404600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:94390800-94396400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:94391000-94404600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:94391200-94396400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:94391800-94396600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:94392200-94398000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:94394600-94396000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:94394600-94396000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:94394600-94396000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:94394800-94396000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:94394800-94396200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:94395000-94396200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:94395400-94396600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:94395400-94396600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:94395400-94410800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:94395600-94396000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr11:94395600-94396000	Enhancers	NHEK	skin
18	chr11:94395600-94396400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:94395600-94396400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:94395600-94397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:94395800-94396400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:94395800-94399200	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links