The 2.0 version of rSNPBase

Variant report

Variant rs11949017
Chromosome Location chr5:127809413-127809414
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:30 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:127773400-127830000 Weak transcription NHEK skin
2 chr5:127784000-127826800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr5:127788800-127810600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr5:127792400-127812400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr5:127796200-127812000 Weak transcription A549 lung
6 chr5:127796400-127826600 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr5:127800400-127845600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr5:127800600-127813400 Weak transcription Right Ventricle heart
9 chr5:127800600-127816200 Weak transcription Fetal Muscle Trunk muscle
10 chr5:127800800-127827000 Weak transcription HUES64 Cell Line embryonic stem cell
11 chr5:127803000-127810600 Weak transcription Left Ventricle heart
12 chr5:127803400-127839200 Weak transcription Fetal Stomach stomach
13 chr5:127805200-127814200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr5:127805600-127809600 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr5:127806000-127818800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr5:127806400-127809600 Weak transcription Monocytes-CD14+_RO01746 blood
17 chr5:127806400-127811000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr5:127806400-127816000 Weak transcription Fetal Muscle Leg muscle
19 chr5:127806400-127830400 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr5:127806400-127847000 Weak transcription NHDF-Ad bronchial
21 chr5:127806600-127827000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr5:127806600-127839600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr5:127806600-127839600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr5:127806600-127839600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr5:127806800-127809800 Enhancers Fetal Heart heart
26 chr5:127806800-127822600 Weak transcription Muscle Satellite Cultured Cells --
27 chr5:127807800-127810800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr5:127808000-127811000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr5:127808200-127809800 Enhancers Placenta Placenta
30 chr5:127808600-127810800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015