Variant report

Variant rs6865828
Chromosome Location chr5:127872314-127872315
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:127853200-127872400 Weak transcription Osteobl bone
2 chr5:127869200-127875000 Active TSS Fetal Heart heart
3 chr5:127870400-127872400 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr5:127870800-127875200 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
5 chr5:127871000-127875400 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
6 chr5:127871200-127872800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
7 chr5:127871200-127873800 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
8 chr5:127871200-127875400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr5:127871600-127872400 Flanking Bivalent TSS/Enh HUES48 Cell Line embryonic stem cell
10 chr5:127871600-127872600 Flanking Bivalent TSS/Enh iPS-18 Cell Line embryonic stem cell
11 chr5:127871600-127873200 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr5:127871600-127875000 Bivalent/Poised TSS Fetal Intestine Small intestine
13 chr5:127871800-127872600 Flanking Active TSS NH-A brain
14 chr5:127871800-127872800 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr5:127871800-127872800 Flanking Active TSS Cortex derived primary cultured neurospheres brain
16 chr5:127871800-127873200 Bivalent/Poised TSS ES-UCSF4 Cell Line embryonic stem cell
17 chr5:127871800-127874400 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
18 chr5:127871800-127874800 Bivalent/Poised TSS NHDF-Ad bronchial
19 chr5:127871800-127875200 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr5:127871800-127875200 Bivalent/Poised TSS Fetal Intestine Large intestine
21 chr5:127871800-127875200 Active TSS Left Ventricle heart
22 chr5:127871800-127875200 Active TSS Right Ventricle heart
23 chr5:127871800-127875400 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
24 chr5:127872000-127872400 Bivalent/Poised TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr5:127872000-127872400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr5:127872000-127872400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr5:127872000-127872400 Enhancers Ovary ovary
28 chr5:127872000-127872400 Transcr. at gene 5' and 3' NHEK skin
29 chr5:127872000-127872400 Active TSS NHLF lung
30 chr5:127872000-127872600 Flanking Bivalent TSS/Enh Fetal Lung lung
31 chr5:127872000-127872600 Flanking Active TSS HUVEC blood vessel
32 chr5:127872000-127873000 Bivalent/Poised TSS H9 Cell Line embryonic stem cell
33 chr5:127872000-127873000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
34 chr5:127872000-127873000 Enhancers Pancreas Pancrea
35 chr5:127872000-127873000 Flanking Active TSS HMEC breast
36 chr5:127872000-127873400 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
37 chr5:127872000-127873400 Bivalent/Poised TSS Rectal Smooth Muscle rectum
38 chr5:127872000-127874200 Active TSS Primary neutrophils fromperipheralblood blood
39 chr5:127872000-127874400 Bivalent/Poised TSS Fetal Brain Female brain
40 chr5:127872000-127875200 Bivalent/Poised TSS Fetal Stomach stomach
41 chr5:127872000-127875400 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr5:127872200-127872400 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
43 chr5:127872200-127872400 Bivalent/Poised TSS H9 Derived Neuron Cultured Cells ES cell derived
44 chr5:127872200-127872400 Flanking Bivalent TSS/Enh Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr5:127872200-127872400 Bivalent Enhancer Primary monocytes fromperipheralblood blood
46 chr5:127872200-127872400 Bivalent Enhancer Brain Germinal Matrix brain
47 chr5:127872200-127872600 Active TSS H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr5:127872200-127872600 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
49 chr5:127872200-127872600 Flanking Bivalent TSS/Enh iPS-15b Cell Line embryonic stem cell
50 chr5:127872200-127872600 Flanking Bivalent TSS/Enh iPS DF 6.9 Cell Line embryonic stem cell

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