The 2.0 version of rSNPBase

Variant report

Variant rs55944506
Chromosome Location chr5:127844522-127844523
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:127800400-127845600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr5:127806400-127847000 Weak transcription NHDF-Ad bronchial
3 chr5:127824800-127853800 Weak transcription Placenta Amnion Placenta Amnion
4 chr5:127826200-127859800 Weak transcription NH-A brain
5 chr5:127827200-127849600 Weak transcription Muscle Satellite Cultured Cells --
6 chr5:127827200-127870400 Weak transcription Fetal Kidney kidney
7 chr5:127827600-127854000 Weak transcription HUVEC blood vessel
8 chr5:127835400-127845800 Weak transcription A549 lung
9 chr5:127840200-127853600 Weak transcription HMEC breast
10 chr5:127840200-127854200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr5:127840200-127859600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr5:127840200-127870400 Weak transcription Left Ventricle heart
13 chr5:127840200-127872000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr5:127840400-127853600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr5:127840400-127853600 Weak transcription Fetal Muscle Trunk muscle
16 chr5:127840400-127864200 Weak transcription Fetal Intestine Large intestine
17 chr5:127840400-127867600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr5:127840600-127845600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr5:127840800-127853000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr5:127841000-127845400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr5:127841000-127845400 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr5:127841000-127845600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr5:127841000-127853600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr5:127841000-127853800 Weak transcription Fetal Stomach stomach
25 chr5:127841000-127859600 Weak transcription NHEK skin
26 chr5:127841000-127870200 Weak transcription H1 Cell Line embryonic stem cell
27 chr5:127841200-127853800 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr5:127841400-127853800 Weak transcription Fetal Muscle Leg muscle
29 chr5:127842600-127847000 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr5:127842600-127863600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr5:127843000-127852600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr5:127843400-127857800 Strong transcription Monocytes-CD14+_RO01746 blood
33 chr5:127843600-127845600 Weak transcription Placenta Placenta
34 chr5:127843600-127853000 Weak transcription Primary monocytes fromperipheralblood blood
35 chr5:127844000-127845600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr5:127844000-127847000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr5:127844200-127845000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr5:127844200-127846000 Weak transcription Fetal Heart heart
39 chr5:127844200-127847200 Weak transcription HUES64 Cell Line embryonic stem cell
40 chr5:127844200-127860000 Weak transcription Fetal Lung lung
41 chr5:127844400-127855800 Weak transcription iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015