The 2.0 version of rSNPBase

Variant report

Variant rs17677244
Chromosome Location chr5:127801323-127801324
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:127772600-127807600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr5:127773000-127809400 Weak transcription HMEC breast
3 chr5:127773400-127830000 Weak transcription NHEK skin
4 chr5:127779400-127807400 Weak transcription Fetal Kidney kidney
5 chr5:127780400-127806400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr5:127780800-127805400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr5:127784000-127826800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr5:127787400-127806200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr5:127788800-127810600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr5:127789600-127802800 Weak transcription Left Ventricle heart
11 chr5:127790600-127802200 Weak transcription Fetal Lung lung
12 chr5:127792200-127807000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr5:127792200-127808200 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr5:127792400-127812400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr5:127792800-127805800 Weak transcription Placenta Amnion Placenta Amnion
16 chr5:127793200-127802800 Weak transcription Fetal Stomach stomach
17 chr5:127795800-127806000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr5:127796200-127812000 Weak transcription A549 lung
19 chr5:127796400-127826600 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr5:127796800-127807200 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr5:127797200-127801800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr5:127797400-127801800 Strong transcription Monocytes-CD14+_RO01746 blood
23 chr5:127797800-127801800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr5:127798400-127807400 Weak transcription Fetal Intestine Large intestine
25 chr5:127798600-127801600 Strong transcription Placenta Placenta
26 chr5:127799000-127802200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr5:127799200-127801600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr5:127799200-127801800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr5:127799800-127801800 Genic enhancers Fetal Heart heart
30 chr5:127800400-127845600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr5:127800600-127801600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr5:127800600-127802600 Weak transcription Ovary ovary
33 chr5:127800600-127804800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr5:127800600-127804800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr5:127800600-127807600 Weak transcription Primary monocytes fromperipheralblood blood
36 chr5:127800600-127813400 Weak transcription Right Ventricle heart
37 chr5:127800600-127816200 Weak transcription Fetal Muscle Trunk muscle
38 chr5:127800800-127804800 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr5:127800800-127806600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr5:127800800-127827000 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr5:127801000-127801800 Enhancers Fetal Muscle Leg muscle
42 chr5:127801000-127805400 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015