The 2.0 version of rSNPBase

Variant report

Variant rs12030572
Chromosome Location chr1:213035671-213035672
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:213032600-213037000 Enhancers Primary monocytes fromperipheralblood blood
2 chr1:213032600-213046400 Weak transcription Ovary ovary
3 chr1:213032600-213049200 Weak transcription Right Atrium heart
4 chr1:213032600-213073000 Weak transcription Colonic Mucosa Colon
5 chr1:213032600-213073000 Weak transcription Esophagus oesophagus
6 chr1:213032800-213036200 Enhancers Monocytes-CD14+_RO01746 blood
7 chr1:213032800-213036400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
8 chr1:213032800-213046400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:213032800-213048000 Weak transcription Rectal Smooth Muscle rectum
10 chr1:213032800-213056800 Weak transcription Fetal Thymus thymus
11 chr1:213032800-213057800 Weak transcription Placenta Placenta
12 chr1:213032800-213061800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:213032800-213062000 Weak transcription Psoas Muscle Psoas
14 chr1:213033200-213035800 Enhancers Small Intestine intestine
15 chr1:213033400-213038200 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
16 chr1:213033400-213046800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr1:213033400-213046800 Weak transcription Stomach Smooth Muscle stomach
18 chr1:213033600-213037000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr1:213033600-213046800 Weak transcription Liver Liver
20 chr1:213033600-213048600 Weak transcription Skeletal Muscle Male skeletal muscle
21 chr1:213033600-213062000 Weak transcription Thymus Thymus
22 chr1:213033800-213036000 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
23 chr1:213033800-213037600 Transcr. at gene 5' and 3' HUES48 Cell Line embryonic stem cell
24 chr1:213034000-213035800 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr1:213034000-213037400 Weak transcription Primary T cells fromperipheralblood blood
26 chr1:213034000-213037400 Weak transcription Fetal Muscle Trunk muscle
27 chr1:213034200-213037000 Weak transcription Primary T cells from cord blood blood
28 chr1:213034400-213037200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr1:213034400-213037200 Weak transcription Adipose Nuclei Adipose
30 chr1:213034400-213041200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr1:213034400-213044800 Weak transcription HSMMtube muscle
32 chr1:213034400-213046200 Weak transcription Fetal Lung lung
33 chr1:213034400-213046600 Weak transcription Primary T helper naive cells from peripheral blood blood
34 chr1:213034400-213046600 Weak transcription Brain Cingulate Gyrus brain
35 chr1:213034400-213048200 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr1:213034400-213048400 Weak transcription Brain Hippocampus Middle brain
37 chr1:213034400-213058000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr1:213034400-213068000 Weak transcription Colon Smooth Muscle Colon
39 chr1:213034600-213035800 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
40 chr1:213034600-213035800 Genic enhancers Primary hematopoietic stem cells short term culture blood
41 chr1:213034600-213035800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:213034600-213036000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr1:213034600-213036200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:213034600-213036200 Strong transcription Cortex derived primary cultured neurospheres brain
45 chr1:213034600-213036200 Strong transcription Fetal Muscle Leg muscle
46 chr1:213034600-213036400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr1:213034600-213037000 Active TSS iPS-15b Cell Line embryonic stem cell
48 chr1:213034600-213037000 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr1:213034600-213037000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr1:213034600-213037200 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015