The 2.0 version of rSNPBase

Variant report

Variant rs12122682
Chromosome Location chr1:213047498-213047499
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:213032600-213049200 Weak transcription Right Atrium heart
2 chr1:213032600-213073000 Weak transcription Colonic Mucosa Colon
3 chr1:213032600-213073000 Weak transcription Esophagus oesophagus
4 chr1:213032800-213048000 Weak transcription Rectal Smooth Muscle rectum
5 chr1:213032800-213056800 Weak transcription Fetal Thymus thymus
6 chr1:213032800-213057800 Weak transcription Placenta Placenta
7 chr1:213032800-213061800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:213032800-213062000 Weak transcription Psoas Muscle Psoas
9 chr1:213033600-213048600 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr1:213033600-213062000 Weak transcription Thymus Thymus
11 chr1:213034400-213048200 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr1:213034400-213048400 Weak transcription Brain Hippocampus Middle brain
13 chr1:213034400-213058000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr1:213034400-213068000 Weak transcription Colon Smooth Muscle Colon
15 chr1:213034600-213048000 Weak transcription Spleen Spleen
16 chr1:213034600-213048600 Weak transcription Primary T helper naive cells fromperipheralblood blood
17 chr1:213034600-213048600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr1:213034600-213049200 Weak transcription Brain Inferior Temporal Lobe brain
19 chr1:213034600-213049200 Weak transcription Lung lung
20 chr1:213034600-213049400 Weak transcription Gastric stomach
21 chr1:213034600-213056200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr1:213034600-213057000 Weak transcription Brain Substantia Nigra brain
23 chr1:213034600-213057000 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr1:213034600-213057200 Weak transcription Right Ventricle heart
25 chr1:213034600-213061800 Weak transcription Fetal Heart heart
26 chr1:213034600-213067800 Weak transcription NHLF lung
27 chr1:213034600-213070600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr1:213035800-213049400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr1:213035800-213073000 Weak transcription Small Intestine intestine
30 chr1:213036000-213070800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:213036200-213062000 Weak transcription Primary T killer memory cells from peripheral blood blood
32 chr1:213036400-213062000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
33 chr1:213036600-213051400 Strong transcription iPS-18 Cell Line embryonic stem cell
34 chr1:213036600-213053200 Strong transcription iPS-20b Cell Line embryonic stem cell
35 chr1:213037600-213073200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr1:213037800-213048200 Weak transcription ES-WA7 Cell Line embryonic stem cell
37 chr1:213037800-213048200 Weak transcription Fetal Brain Male brain
38 chr1:213037800-213052000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr1:213037800-213052400 Strong transcription HUES48 Cell Line embryonic stem cell
40 chr1:213037800-213052600 Strong transcription HUES6 Cell Line embryonic stem cell
41 chr1:213038200-213052400 Strong transcription HUES64 Cell Line embryonic stem cell
42 chr1:213038400-213072000 Weak transcription Pancreatic Islets Pancreatic Islet
43 chr1:213039400-213054000 Strong transcription Primary hematopoietic stem cells short term culture blood
44 chr1:213039600-213073000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr1:213040400-213073000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr1:213040800-213055200 Weak transcription Primary T helper cells PMA-I stimulated --
47 chr1:213041400-213055000 Strong transcription Fetal Intestine Small intestine
48 chr1:213041800-213050400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr1:213043200-213062000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr1:213043200-213073400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell

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Last update: Aug 31, 2015