The 2.0 version of rSNPBase

Variant report

Variant rs1874417
Chromosome Location chr1:213036708-213036709
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:213032600-213037000 Enhancers Primary monocytes fromperipheralblood blood
2 chr1:213032600-213046400 Weak transcription Ovary ovary
3 chr1:213032600-213049200 Weak transcription Right Atrium heart
4 chr1:213032600-213073000 Weak transcription Colonic Mucosa Colon
5 chr1:213032600-213073000 Weak transcription Esophagus oesophagus
6 chr1:213032800-213046400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
7 chr1:213032800-213048000 Weak transcription Rectal Smooth Muscle rectum
8 chr1:213032800-213056800 Weak transcription Fetal Thymus thymus
9 chr1:213032800-213057800 Weak transcription Placenta Placenta
10 chr1:213032800-213061800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:213032800-213062000 Weak transcription Psoas Muscle Psoas
12 chr1:213033400-213038200 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
13 chr1:213033400-213046800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr1:213033400-213046800 Weak transcription Stomach Smooth Muscle stomach
15 chr1:213033600-213037000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr1:213033600-213046800 Weak transcription Liver Liver
17 chr1:213033600-213048600 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr1:213033600-213062000 Weak transcription Thymus Thymus
19 chr1:213033800-213037600 Transcr. at gene 5' and 3' HUES48 Cell Line embryonic stem cell
20 chr1:213034000-213037400 Weak transcription Primary T cells fromperipheralblood blood
21 chr1:213034000-213037400 Weak transcription Fetal Muscle Trunk muscle
22 chr1:213034200-213037000 Weak transcription Primary T cells from cord blood blood
23 chr1:213034400-213037200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:213034400-213037200 Weak transcription Adipose Nuclei Adipose
25 chr1:213034400-213041200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr1:213034400-213044800 Weak transcription HSMMtube muscle
27 chr1:213034400-213046200 Weak transcription Fetal Lung lung
28 chr1:213034400-213046600 Weak transcription Primary T helper naive cells from peripheral blood blood
29 chr1:213034400-213046600 Weak transcription Brain Cingulate Gyrus brain
30 chr1:213034400-213048200 Weak transcription Primary T killer naive cells fromperipheralblood blood
31 chr1:213034400-213048400 Weak transcription Brain Hippocampus Middle brain
32 chr1:213034400-213058000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
33 chr1:213034400-213068000 Weak transcription Colon Smooth Muscle Colon
34 chr1:213034600-213037000 Active TSS iPS-15b Cell Line embryonic stem cell
35 chr1:213034600-213037000 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr1:213034600-213037000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr1:213034600-213037200 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr1:213034600-213037200 Weak transcription Osteobl bone
39 chr1:213034600-213037400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr1:213034600-213037400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr1:213034600-213037400 Weak transcription Muscle Satellite Cultured Cells --
42 chr1:213034600-213037400 Weak transcription Duodenum Mucosa Duodenum
43 chr1:213034600-213037400 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr1:213034600-213037600 Weak transcription NH-A brain
45 chr1:213034600-213039000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:213034600-213039600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr1:213034600-213041400 Weak transcription Fetal Stomach stomach
48 chr1:213034600-213044200 Weak transcription Aorta Aorta
49 chr1:213034600-213044800 Weak transcription Left Ventricle heart
50 chr1:213034600-213044800 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015