Variant report

Variant	rs12752760
Chromosome Location	chr1:59221344-59221345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:59217055..59218616-chr1:59218904..59221423,2	K562	blood:
2	chr1:59220212..59222272-chr1:59278796..59281544,2	MCF-7	breast:
3	chr1:59220027..59223017-chr1:59223976..59225807,2	K562	blood:
4	chr1:59215864..59218251-chr1:59218581..59221945,3	MCF-7	breast:
5	chr1:59219806..59223167-chr1:59247510..59251005,5	MCF-7	breast:
6	chr1:59214840..59216632-chr1:59220643..59222898,2	K562	blood:
7	chr1:59212166..59214810-chr1:59218835..59222671,3	K562	blood:
8	chr1:59212166..59214915-chr1:59219961..59222671,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272226	Chromatin interaction
ENSG00000177606	Chromatin interaction
ENSG00000234807	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12723424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17264985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17265089	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1980700	0.80[EUR][1000 genomes]
rs2811890	0.80[EUR][1000 genomes]
rs33989940	0.80[EUR][1000 genomes]
rs34328062	0.80[EUR][1000 genomes]
rs34399110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34417049	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34451092	0.80[EUR][1000 genomes]
rs34938302	0.80[EUR][1000 genomes]
rs34984409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35299642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35315513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35354349	0.80[EUR][1000 genomes]
rs55805512	0.80[EUR][1000 genomes]
rs61778520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59218000-59223200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:59218200-59223000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:59218200-59223200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:59218200-59223800	Enhancers	NHDF-Ad	bronchial
5	chr1:59218400-59221800	Enhancers	A549	lung
6	chr1:59218400-59222200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:59218400-59222800	Enhancers	NHEK	skin
8	chr1:59218400-59223000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:59218600-59222400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:59218600-59222400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:59218600-59222800	Enhancers	HMEC	breast
12	chr1:59218600-59223400	Enhancers	NHLF	lung
13	chr1:59218800-59222600	Enhancers	HSMM	muscle
14	chr1:59218800-59223200	Enhancers	Fetal Thymus	thymus
15	chr1:59219200-59221800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:59219200-59221800	Enhancers	Brain Cingulate Gyrus	brain
17	chr1:59219400-59222000	Enhancers	Liver	Liver
18	chr1:59219400-59222600	Enhancers	HepG2	liver
19	chr1:59219600-59222800	Enhancers	Osteobl	bone
20	chr1:59219800-59221400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:59219800-59221600	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr1:59219800-59221600	Enhancers	Fetal Brain Male	brain
23	chr1:59219800-59221800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:59219800-59222000	Enhancers	K562	blood
25	chr1:59219800-59222400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr1:59219800-59222400	Enhancers	Aorta	Aorta
27	chr1:59219800-59222800	Enhancers	Right Atrium	heart
28	chr1:59219800-59223000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr1:59219800-59223000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr1:59219800-59223200	Enhancers	Primary hematopoietic stem cells	blood
31	chr1:59219800-59223200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr1:59220000-59222000	Enhancers	Placenta Amnion	Placenta Amnion
33	chr1:59220000-59222000	Enhancers	Psoas Muscle	Psoas
34	chr1:59220000-59222200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:59220000-59222200	Enhancers	Lung	lung
36	chr1:59220000-59223200	Enhancers	Left Ventricle	heart
37	chr1:59220000-59223200	Enhancers	Small Intestine	intestine
38	chr1:59220000-59223400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr1:59220200-59221600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr1:59220400-59222200	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr1:59220400-59222200	Enhancers	Brain Substantia Nigra	brain
42	chr1:59220400-59223200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr1:59220400-59223200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr1:59220600-59221400	Enhancers	Primary B cells from cord blood	blood
45	chr1:59220600-59222000	Enhancers	Brain Anterior Caudate	brain
46	chr1:59220600-59222200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr1:59220600-59222200	Enhancers	Adipose Nuclei	Adipose
48	chr1:59220600-59222200	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr1:59220600-59222400	Enhancers	Thymus	Thymus
50	chr1:59220800-59221400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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