Variant report

Variant	rs35354349
Chromosome Location	chr1:59242853-59242854
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:59242721..59245330-chr1:60216701..60219634,2	K562	blood:
2	chr1:59242837..59245513-chr1:59295604..59297496,2	K562	blood:
3	chr1:59242780..59245700-chr1:59478841..59480506,2	K562	blood:
4	chr1:59242721..59245665-chr1:60216074..60219634,4	K562	blood:
5	chr1:59242448..59251438-chr1:59358057..59375559,39	K562	blood:
6	chr1:59164480..59167394-chr1:59240271..59243208,3	K562	blood:
7	chr1:59241390..59244265-chr1:60161220..60164173,2	K562	blood:
8	chr1:59240422..59242975-chr1:59278998..59281034,2	K562	blood:
9	chr1:59001436..59003298-chr1:59241272..59243943,2	K562	blood:
10	chr1:59242715..59245433-chr1:59442706..59445408,2	K562	blood:
11	chr1:59242448..59252747-chr1:59356992..59375072,48	K562	blood:

No data

Variant related genes	Relation type
ENSG00000162601	Chromatin interaction
ENSG00000232453	Chromatin interaction
ENSG00000272226	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10157302	1.00[ASN][1000 genomes]
rs10158603	1.00[ASN][1000 genomes]
rs11688	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807819	1.00[ASN][1000 genomes]
rs12723424	0.80[EUR][1000 genomes]
rs12752760	0.80[EUR][1000 genomes]
rs17264985	0.80[EUR][1000 genomes]
rs17265089	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980700	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811890	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs33989940	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34328062	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34399110	0.80[EUR][1000 genomes]
rs34417049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34451092	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34938302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34984409	0.80[EUR][1000 genomes]
rs35299642	0.80[EUR][1000 genomes]
rs35315513	0.80[EUR][1000 genomes]
rs4647014	0.80[AFR][1000 genomes]
rs55805512	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61778520	0.80[EUR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59235000-59245600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:59236200-59245600	Weak transcription	Fetal Brain Male	brain
3	chr1:59239200-59245600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:59239400-59245600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:59239400-59245600	Weak transcription	Psoas Muscle	Psoas
6	chr1:59239400-59245800	Weak transcription	Fetal Brain Female	brain
7	chr1:59239800-59245200	Weak transcription	Aorta	Aorta
8	chr1:59239800-59245600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:59239800-59245600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:59239800-59245600	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:59239800-59245600	Weak transcription	Fetal Stomach	stomach
12	chr1:59239800-59245600	Weak transcription	Right Atrium	heart
13	chr1:59239800-59245800	Weak transcription	Brain Substantia Nigra	brain
14	chr1:59239800-59246600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:59239800-59247200	Weak transcription	Esophagus	oesophagus
16	chr1:59239800-59247400	Weak transcription	Gastric	stomach
17	chr1:59240000-59244800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:59240000-59245400	Weak transcription	NH-A	brain
19	chr1:59240000-59245600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr1:59240000-59245600	Weak transcription	Adipose Nuclei	Adipose
21	chr1:59240000-59245600	Weak transcription	NHDF-Ad	bronchial
22	chr1:59240000-59245800	Weak transcription	HSMM	muscle
23	chr1:59240200-59245400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:59240200-59245400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:59240200-59245400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:59240200-59245400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr1:59240200-59245600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:59240200-59245600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr1:59240400-59245400	Weak transcription	HUVEC	blood vessel
30	chr1:59240600-59245400	Weak transcription	Fetal Heart	heart
31	chr1:59240600-59245400	Weak transcription	Stomach Mucosa	stomach
32	chr1:59240600-59245600	Weak transcription	Right Ventricle	heart
33	chr1:59240600-59246600	Weak transcription	Left Ventricle	heart
34	chr1:59240800-59245800	Weak transcription	HepG2	liver
35	chr1:59240800-59246600	Weak transcription	Pancreas	Pancrea

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