Variant report

Variant	rs2811890
Chromosome Location	chr1:59239481-59239482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59238954..59240946-chr1:59453097..59454972,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10157302	0.83[ASN][1000 genomes]
rs10158603	0.83[ASN][1000 genomes]
rs11688	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11807819	0.83[ASN][1000 genomes]
rs12723424	0.80[EUR][1000 genomes]
rs12752760	0.80[EUR][1000 genomes]
rs17264985	0.80[EUR][1000 genomes]
rs17265089	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1980700	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs33989940	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34328062	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34399110	0.80[EUR][1000 genomes]
rs34417049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34451092	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34938302	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34984409	0.80[EUR][1000 genomes]
rs35299642	0.80[EUR][1000 genomes]
rs35315513	0.80[EUR][1000 genomes]
rs35354349	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55805512	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61778520	0.80[EUR][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59235000-59245600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:59236200-59245600	Weak transcription	Fetal Brain Male	brain
3	chr1:59238000-59240200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:59238000-59240200	Enhancers	Stomach Smooth Muscle	stomach
5	chr1:59238200-59240000	Enhancers	NHDF-Ad	bronchial
6	chr1:59238200-59240200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:59238200-59240400	Enhancers	HUVEC	blood vessel
8	chr1:59238200-59240600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:59238200-59240800	Enhancers	Pancreas	Pancrea
10	chr1:59238600-59239600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:59238600-59239800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:59238600-59239800	Enhancers	Brain Substantia Nigra	brain
13	chr1:59238600-59239800	Enhancers	Fetal Thymus	thymus
14	chr1:59238600-59240000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:59238600-59240000	Enhancers	Adipose Nuclei	Adipose
16	chr1:59238600-59240200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr1:59238600-59240200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:59238600-59240200	Enhancers	Fetal Muscle Leg	muscle
19	chr1:59238600-59240200	Enhancers	GM12878-XiMat	blood
20	chr1:59238600-59240600	Enhancers	Primary B cells from peripheral blood	blood
21	chr1:59238600-59240600	Enhancers	Fetal Heart	heart
22	chr1:59238600-59240600	Enhancers	Stomach Mucosa	stomach
23	chr1:59238800-59239600	Enhancers	Primary hematopoietic stem cells	blood
24	chr1:59238800-59239600	Enhancers	Brain Anterior Caudate	brain
25	chr1:59238800-59239800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:59238800-59239800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:59238800-59239800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:59238800-59239800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr1:59238800-59239800	Enhancers	Primary T cells from cord blood	blood
30	chr1:59238800-59239800	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr1:59238800-59239800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr1:59238800-59239800	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr1:59238800-59239800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr1:59238800-59239800	Enhancers	Liver	Liver
35	chr1:59238800-59239800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr1:59238800-59239800	Enhancers	Colon Smooth Muscle	Colon
37	chr1:59238800-59239800	Enhancers	Esophagus	oesophagus
38	chr1:59238800-59239800	Enhancers	Fetal Stomach	stomach
39	chr1:59238800-59239800	Enhancers	Right Atrium	heart
40	chr1:59238800-59239800	Flanking Active TSS	Dnd41	blood
41	chr1:59238800-59239800	Enhancers	NHLF	lung
42	chr1:59238800-59240000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:59238800-59240000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:59238800-59240000	Enhancers	Brain Hippocampus Middle	brain
45	chr1:59238800-59240000	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr1:59238800-59240000	Enhancers	Left Ventricle	heart
47	chr1:59238800-59240000	Enhancers	HSMM	muscle
48	chr1:59238800-59240000	Enhancers	NH-A	brain
49	chr1:59238800-59240200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr1:59238800-59240200	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links