Variant report

Variant	rs34938302
Chromosome Location	chr1:59240813-59240814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59234586..59236171-chr1:59239489..59241479,2	MCF-7	breast:
2	chr1:59164867..59167394-chr1:59239507..59241771,2	K562	blood:
3	chr1:59238954..59240946-chr1:59453097..59454972,2	K562	blood:
4	chr1:59164480..59167394-chr1:59240271..59243208,3	K562	blood:
5	chr1:59240422..59242975-chr1:59278998..59281034,2	K562	blood:

Variant related genes	Relation type
ENSG00000162601	Chromatin interaction
ENSG00000272226	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10157302	1.00[ASN][1000 genomes]
rs10158603	1.00[ASN][1000 genomes]
rs11688	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807819	1.00[ASN][1000 genomes]
rs12723424	0.80[EUR][1000 genomes]
rs12752760	0.80[EUR][1000 genomes]
rs17117850	1.00[MEX][hapmap]
rs17264985	0.80[EUR][1000 genomes]
rs17265089	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811890	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs33989940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34328062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34399110	0.80[EUR][1000 genomes]
rs34417049	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34451092	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34984409	0.80[EUR][1000 genomes]
rs35299642	0.80[EUR][1000 genomes]
rs35315513	0.80[EUR][1000 genomes]
rs35354349	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4647013	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs4647019	0.86[AFR][1000 genomes]
rs55805512	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58339644	0.86[AFR][1000 genomes]
rs61778520	0.80[EUR][1000 genomes]
rs74078639	0.86[AFR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59235000-59245600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:59236200-59245600	Weak transcription	Fetal Brain Male	brain
3	chr1:59239200-59245600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:59239400-59245600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:59239400-59245600	Weak transcription	Psoas Muscle	Psoas
6	chr1:59239400-59245800	Weak transcription	Fetal Brain Female	brain
7	chr1:59239800-59241400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:59239800-59241400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr1:59239800-59241600	Weak transcription	NHLF	lung
10	chr1:59239800-59245200	Weak transcription	Aorta	Aorta
11	chr1:59239800-59245600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:59239800-59245600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:59239800-59245600	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:59239800-59245600	Weak transcription	Fetal Stomach	stomach
15	chr1:59239800-59245600	Weak transcription	Right Atrium	heart
16	chr1:59239800-59245800	Weak transcription	Brain Substantia Nigra	brain
17	chr1:59239800-59246600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:59239800-59247200	Weak transcription	Esophagus	oesophagus
19	chr1:59239800-59247400	Weak transcription	Gastric	stomach
20	chr1:59240000-59244800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:59240000-59245400	Weak transcription	NH-A	brain
22	chr1:59240000-59245600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr1:59240000-59245600	Weak transcription	Adipose Nuclei	Adipose
24	chr1:59240000-59245600	Weak transcription	NHDF-Ad	bronchial
25	chr1:59240000-59245800	Weak transcription	HSMM	muscle
26	chr1:59240200-59245400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr1:59240200-59245400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:59240200-59245400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr1:59240200-59245400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:59240200-59245600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr1:59240200-59245600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr1:59240400-59245400	Weak transcription	HUVEC	blood vessel
33	chr1:59240600-59245400	Weak transcription	Fetal Heart	heart
34	chr1:59240600-59245400	Weak transcription	Stomach Mucosa	stomach
35	chr1:59240600-59245600	Weak transcription	Right Ventricle	heart
36	chr1:59240600-59246600	Weak transcription	Left Ventricle	heart
37	chr1:59240800-59245800	Weak transcription	HepG2	liver
38	chr1:59240800-59246600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links