The 2.0 version of rSNPBase

Variant report

Variant rs55805512
Chromosome Location chr1:59240455-59240456
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59235000-59245600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
2 chr1:59236200-59245600 Weak transcription Fetal Brain Male brain
3 chr1:59238200-59240600 Enhancers Skeletal Muscle Female skeletal muscle
4 chr1:59238200-59240800 Enhancers Pancreas Pancrea
5 chr1:59238600-59240600 Enhancers Primary B cells from peripheral blood blood
6 chr1:59238600-59240600 Enhancers Fetal Heart heart
7 chr1:59238600-59240600 Enhancers Stomach Mucosa stomach
8 chr1:59238800-59240600 Enhancers Right Ventricle heart
9 chr1:59239200-59245600 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr1:59239400-59245600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:59239400-59245600 Weak transcription Psoas Muscle Psoas
12 chr1:59239400-59245800 Weak transcription Fetal Brain Female brain
13 chr1:59239800-59240800 Enhancers HepG2 liver
14 chr1:59239800-59241400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr1:59239800-59241400 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr1:59239800-59241600 Weak transcription NHLF lung
17 chr1:59239800-59245200 Weak transcription Aorta Aorta
18 chr1:59239800-59245600 Weak transcription Muscle Satellite Cultured Cells --
19 chr1:59239800-59245600 Weak transcription Brain Cingulate Gyrus brain
20 chr1:59239800-59245600 Weak transcription Colon Smooth Muscle Colon
21 chr1:59239800-59245600 Weak transcription Fetal Stomach stomach
22 chr1:59239800-59245600 Weak transcription Right Atrium heart
23 chr1:59239800-59245800 Weak transcription Brain Substantia Nigra brain
24 chr1:59239800-59246600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:59239800-59247200 Weak transcription Esophagus oesophagus
26 chr1:59239800-59247400 Weak transcription Gastric stomach
27 chr1:59240000-59244800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr1:59240000-59245400 Weak transcription NH-A brain
29 chr1:59240000-59245600 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr1:59240000-59245600 Weak transcription Adipose Nuclei Adipose
31 chr1:59240000-59245600 Weak transcription NHDF-Ad bronchial
32 chr1:59240000-59245800 Weak transcription HSMM muscle
33 chr1:59240200-59245400 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr1:59240200-59245400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
35 chr1:59240200-59245400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr1:59240200-59245400 Weak transcription Rectal Smooth Muscle rectum
37 chr1:59240200-59245600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
38 chr1:59240200-59245600 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr1:59240400-59240600 Enhancers Left Ventricle heart
40 chr1:59240400-59245400 Weak transcription HUVEC blood vessel

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Last update: Aug 31, 2015