Variant report

Variant	rs33989940
Chromosome Location	chr1:59239988-59239989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59234586..59236171-chr1:59239489..59241479,2	MCF-7	breast:
2	chr1:59164867..59167394-chr1:59239507..59241771,2	K562	blood:
3	chr1:59238954..59240946-chr1:59453097..59454972,2	K562	blood:

Variant related genes	Relation type
ENSG00000162601	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10157302	0.92[ASN][1000 genomes]
rs10158603	0.92[ASN][1000 genomes]
rs11688	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11807819	0.92[ASN][1000 genomes]
rs12723424	0.80[EUR][1000 genomes]
rs12752760	0.80[EUR][1000 genomes]
rs17264985	0.80[EUR][1000 genomes]
rs17265089	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1980700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2811890	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34328062	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34399110	0.80[EUR][1000 genomes]
rs34417049	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34451092	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34938302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34984409	0.80[EUR][1000 genomes]
rs35299642	0.80[EUR][1000 genomes]
rs35315513	0.80[EUR][1000 genomes]
rs35354349	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55805512	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61778520	0.80[EUR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59235000-59245600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:59236200-59245600	Weak transcription	Fetal Brain Male	brain
3	chr1:59238000-59240200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:59238000-59240200	Enhancers	Stomach Smooth Muscle	stomach
5	chr1:59238200-59240000	Enhancers	NHDF-Ad	bronchial
6	chr1:59238200-59240200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:59238200-59240400	Enhancers	HUVEC	blood vessel
8	chr1:59238200-59240600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:59238200-59240800	Enhancers	Pancreas	Pancrea
10	chr1:59238600-59240000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:59238600-59240000	Enhancers	Adipose Nuclei	Adipose
12	chr1:59238600-59240200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:59238600-59240200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:59238600-59240200	Enhancers	Fetal Muscle Leg	muscle
15	chr1:59238600-59240200	Enhancers	GM12878-XiMat	blood
16	chr1:59238600-59240600	Enhancers	Primary B cells from peripheral blood	blood
17	chr1:59238600-59240600	Enhancers	Fetal Heart	heart
18	chr1:59238600-59240600	Enhancers	Stomach Mucosa	stomach
19	chr1:59238800-59240000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:59238800-59240000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:59238800-59240000	Enhancers	Brain Hippocampus Middle	brain
22	chr1:59238800-59240000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr1:59238800-59240000	Enhancers	Left Ventricle	heart
24	chr1:59238800-59240000	Enhancers	HSMM	muscle
25	chr1:59238800-59240000	Enhancers	NH-A	brain
26	chr1:59238800-59240200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:59238800-59240200	Enhancers	Rectal Smooth Muscle	rectum
28	chr1:59238800-59240200	Enhancers	Osteobl	bone
29	chr1:59238800-59240400	Enhancers	Primary B cells from cord blood	blood
30	chr1:59238800-59240600	Enhancers	Right Ventricle	heart
31	chr1:59239000-59240000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr1:59239000-59240000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:59239200-59240200	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr1:59239200-59245600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr1:59239400-59245600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:59239400-59245600	Weak transcription	Psoas Muscle	Psoas
37	chr1:59239400-59245800	Weak transcription	Fetal Brain Female	brain
38	chr1:59239800-59240200	Enhancers	Dnd41	blood
39	chr1:59239800-59240800	Enhancers	HepG2	liver
40	chr1:59239800-59241400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:59239800-59241400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr1:59239800-59241600	Weak transcription	NHLF	lung
43	chr1:59239800-59245200	Weak transcription	Aorta	Aorta
44	chr1:59239800-59245600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr1:59239800-59245600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr1:59239800-59245600	Weak transcription	Colon Smooth Muscle	Colon
47	chr1:59239800-59245600	Weak transcription	Fetal Stomach	stomach
48	chr1:59239800-59245600	Weak transcription	Right Atrium	heart
49	chr1:59239800-59245800	Weak transcription	Brain Substantia Nigra	brain
50	chr1:59239800-59246600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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