Variant report

Variant	rs17264985
Chromosome Location	chr1:59227777-59227778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59217240..59220622-chr1:59226403..59228329,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12723424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12752760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17265089	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1980700	0.80[EUR][1000 genomes]
rs2811890	0.80[EUR][1000 genomes]
rs33989940	0.80[EUR][1000 genomes]
rs34328062	0.80[EUR][1000 genomes]
rs34399110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34417049	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34451092	0.80[EUR][1000 genomes]
rs34938302	0.80[EUR][1000 genomes]
rs34984409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35299642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35315513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35354349	0.80[EUR][1000 genomes]
rs55805512	0.80[EUR][1000 genomes]
rs61778520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59221200-59228800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:59222200-59228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:59222200-59230400	Weak transcription	Lung	lung
4	chr1:59222400-59227800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:59222600-59227800	Weak transcription	HSMM	muscle
6	chr1:59222600-59228600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:59222800-59227800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:59222800-59227800	Weak transcription	NHEK	skin
9	chr1:59222800-59227800	Weak transcription	Osteobl	bone
10	chr1:59222800-59229000	Weak transcription	Right Atrium	heart
11	chr1:59223000-59230200	Weak transcription	Aorta	Aorta
12	chr1:59223200-59227800	Weak transcription	Small Intestine	intestine
13	chr1:59223200-59228600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:59223200-59229600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:59226600-59239000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:59227000-59228400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:59227000-59228800	Enhancers	HepG2	liver
18	chr1:59227000-59228800	Enhancers	NHDF-Ad	bronchial
19	chr1:59227000-59231400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:59227000-59231400	Enhancers	HMEC	breast
21	chr1:59227200-59228600	Enhancers	HUVEC	blood vessel
22	chr1:59227400-59228000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr1:59227400-59228600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:59227400-59231400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:59227400-59231400	Enhancers	NHLF	lung
26	chr1:59227600-59228600	Enhancers	NH-A	brain
27	chr1:59227600-59228800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:59227600-59230800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:59227600-59231400	Enhancers	Hela-S3	cervix

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