Variant report

Variant	rs61778520
Chromosome Location	chr1:59224127-59224128
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59223993..59224744-chr2:98676639..98677388,2	MCF-7	breast:
2	chr1:59220027..59223017-chr1:59223976..59225807,2	K562	blood:
3	chr1:59221512..59223085-chr1:59223474..59225809,3	K562	blood:
4	chr1:59223597..59225972-chr1:59243071..59246063,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12723424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12752760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17264985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17265089	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1980700	0.80[EUR][1000 genomes]
rs2811890	0.80[EUR][1000 genomes]
rs33989940	0.80[EUR][1000 genomes]
rs34328062	0.80[EUR][1000 genomes]
rs34399110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34417049	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34451092	0.80[EUR][1000 genomes]
rs34938302	0.80[EUR][1000 genomes]
rs34984409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35299642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35315513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35354349	0.80[EUR][1000 genomes]
rs55805512	0.80[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59221200-59228800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:59222200-59227600	Weak transcription	NH-A	brain
3	chr1:59222200-59228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:59222200-59230400	Weak transcription	Lung	lung
5	chr1:59222400-59227600	Weak transcription	Hela-S3	cervix
6	chr1:59222400-59227800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:59222600-59224400	Weak transcription	HepG2	liver
8	chr1:59222600-59227800	Weak transcription	HSMM	muscle
9	chr1:59222600-59228600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:59222800-59227000	Weak transcription	HMEC	breast
11	chr1:59222800-59227400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:59222800-59227600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:59222800-59227800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:59222800-59227800	Weak transcription	NHEK	skin
15	chr1:59222800-59227800	Weak transcription	Osteobl	bone
16	chr1:59222800-59229000	Weak transcription	Right Atrium	heart
17	chr1:59223000-59227400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:59223000-59227400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:59223000-59227600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:59223000-59230200	Weak transcription	Aorta	Aorta
21	chr1:59223200-59224600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:59223200-59227000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:59223200-59227800	Weak transcription	Small Intestine	intestine
24	chr1:59223200-59228600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr1:59223200-59229600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:59223400-59227400	Weak transcription	NHLF	lung
27	chr1:59223600-59227200	Weak transcription	HUVEC	blood vessel
28	chr1:59223800-59224200	Weak transcription	NHDF-Ad	bronchial

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