The 2.0 version of rSNPBase

Variant report

Variant rs35299642
Chromosome Location chr1:59229533-59229534
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59222200-59230400 Weak transcription Lung lung
2 chr1:59223000-59230200 Weak transcription Aorta Aorta
3 chr1:59223200-59229600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
4 chr1:59226600-59239000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:59227000-59231400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
6 chr1:59227000-59231400 Enhancers HMEC breast
7 chr1:59227400-59231400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:59227400-59231400 Enhancers NHLF lung
9 chr1:59227600-59230800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr1:59227600-59231400 Enhancers Hela-S3 cervix
11 chr1:59227800-59231000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr1:59227800-59231000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr1:59227800-59231000 Enhancers HSMM muscle
14 chr1:59227800-59231200 Enhancers NHEK skin
15 chr1:59228200-59230000 Flanking Active TSS Osteobl bone
16 chr1:59228200-59231200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr1:59228600-59229800 Enhancers Fetal Intestine Small intestine
18 chr1:59228600-59230000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr1:59228600-59230000 Flanking Active TSS Muscle Satellite Cultured Cells --
20 chr1:59228600-59230000 Flanking Active TSS NH-A brain
21 chr1:59228600-59230400 Enhancers Colon Smooth Muscle Colon
22 chr1:59228600-59230800 Enhancers Fetal Adrenal Gland Adrenal Gland
23 chr1:59228600-59230800 Enhancers HSMMtube muscle
24 chr1:59228800-59229600 Weak transcription Rectal Smooth Muscle rectum
25 chr1:59228800-59229800 Flanking Active TSS NHDF-Ad bronchial
26 chr1:59228800-59230200 Enhancers A549 lung
27 chr1:59229000-59229600 Enhancers HUES6 Cell Line embryonic stem cell
28 chr1:59229000-59230000 Enhancers Duodenum Smooth Muscle Duodenum
29 chr1:59229000-59238600 Weak transcription Stomach Mucosa stomach
30 chr1:59229200-59229600 Weak transcription Right Atrium heart
31 chr1:59229200-59230000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr1:59229200-59230000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr1:59229200-59238800 Weak transcription Liver Liver
34 chr1:59229400-59229800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
35 chr1:59229400-59231000 Enhancers HepG2 liver
36 chr1:59229400-59231400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr1:59229400-59231600 Enhancers HUVEC blood vessel
38 chr1:59229400-59234000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
39 chr1:59229400-59235800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
40 chr1:59229400-59238800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr1:59229400-59238800 Weak transcription Right Ventricle heart
42 chr1:59229400-59239000 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015