Variant report

Variant	rs1340524
Chromosome Location	chr1:85144043-85144044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85140411..85147202-chr1:85153312..85157678,10	K562	blood:
2	chr1:85142130..85144254-chr1:85145541..85147633,2	K562	blood:
3	chr1:85143314..85145689-chr1:85154651..85156749,2	MCF-7	breast:
4	chr1:85143129..85145344-chr1:85148403..85151032,2	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10874456	1.00[CEU][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10874457	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1538848	0.82[EUR][1000 genomes]
rs17376391	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2911560	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2911569	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2911572	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2911580	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs2911582	0.92[EUR][1000 genomes]
rs2911612	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2943662	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2994436	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2994438	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2994441	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2994442	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2994444	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2994445	0.86[EUR][1000 genomes]
rs2994609	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2994939	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2994945	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2994950	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3021456	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4434855	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4907090	0.87[EUR][1000 genomes]
rs6576719	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6576720	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72954036	0.92[EUR][1000 genomes]
rs7527484	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7535997	0.92[EUR][1000 genomes]
rs7536257	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7546691	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85087000-85147400	Weak transcription	Gastric	stomach
2	chr1:85106400-85155400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:85108000-85155000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:85111800-85152000	Weak transcription	Aorta	Aorta
5	chr1:85124400-85144400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:85124400-85145200	Weak transcription	Fetal Brain Male	brain
7	chr1:85124400-85149200	Weak transcription	Brain Angular Gyrus	brain
8	chr1:85124600-85154400	Weak transcription	A549	lung
9	chr1:85124800-85153800	Weak transcription	Hela-S3	cervix
10	chr1:85125000-85153400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:85125000-85153600	Weak transcription	Fetal Kidney	kidney
12	chr1:85126200-85154000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:85126400-85154200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:85126400-85154800	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:85126400-85155200	Weak transcription	Left Ventricle	heart
16	chr1:85126600-85152200	Weak transcription	Thymus	Thymus
17	chr1:85126600-85153400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:85126600-85154400	Weak transcription	Fetal Stomach	stomach
19	chr1:85127800-85154400	Weak transcription	Brain Germinal Matrix	brain
20	chr1:85128200-85153600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:85128600-85153200	Weak transcription	Dnd41	blood
22	chr1:85128800-85151000	Weak transcription	Fetal Brain Female	brain
23	chr1:85130400-85153600	Weak transcription	NHDF-Ad	bronchial
24	chr1:85132000-85145200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:85134400-85153400	Weak transcription	NHLF	lung
26	chr1:85138000-85154800	Weak transcription	HSMMtube	muscle
27	chr1:85138400-85153400	Weak transcription	Fetal Thymus	thymus
28	chr1:85138600-85153400	Weak transcription	HSMM	muscle
29	chr1:85138800-85155000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:85139800-85152800	Weak transcription	Primary T cells from cord blood	blood
31	chr1:85139800-85153000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr1:85140000-85154200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr1:85140800-85153400	Weak transcription	NHEK	skin
34	chr1:85141000-85153600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr1:85141000-85154200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:85141000-85154200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr1:85141400-85145200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr1:85141400-85152800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr1:85141400-85154200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:85141600-85145200	Weak transcription	Colon Smooth Muscle	Colon
41	chr1:85141600-85152800	Weak transcription	Brain Anterior Caudate	brain
42	chr1:85141800-85145200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr1:85141800-85145800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr1:85141800-85154200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr1:85142000-85144600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr1:85142200-85145400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr1:85142200-85154200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr1:85142200-85154200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr1:85143000-85144200	Strong transcription	Fetal Intestine Large	intestine
50	chr1:85143000-85144400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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