Variant report

Variant	rs2911572
Chromosome Location	chr1:85157880-85157881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr1:85157074-85159143	K562	blood:	n/a	chr1:85157134-85157147 chr1:85157134-85157147 chr1:85158782-85158803 chr1:85157134-85157147

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85157179..85159526-chr1:85171730..85173430,2	K562	blood:
2	chr1:85156633..85159408-chr1:85174909..85176958,2	MCF-7	breast:

Variant related genes	Relation type
SSX2IP	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10874456	0.85[EUR][1000 genomes]
rs10874457	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1340524	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1538848	0.86[EUR][1000 genomes]
rs17376391	0.87[EUR][1000 genomes]
rs2911560	0.83[EUR][1000 genomes]
rs2911569	0.83[EUR][1000 genomes]
rs2911580	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2911582	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2911612	0.81[EUR][1000 genomes]
rs2943662	0.81[EUR][1000 genomes]
rs2994436	0.83[EUR][1000 genomes]
rs2994438	0.83[EUR][1000 genomes]
rs2994441	0.83[EUR][1000 genomes]
rs2994442	0.83[EUR][1000 genomes]
rs2994445	0.81[EUR][1000 genomes]
rs2994609	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2994939	0.83[EUR][1000 genomes]
rs2994945	0.81[EUR][1000 genomes]
rs2994950	0.83[EUR][1000 genomes]
rs3021456	0.83[EUR][1000 genomes]
rs4434855	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4907090	0.92[EUR][1000 genomes]
rs6576719	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6576720	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72954036	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7527484	0.87[EUR][1000 genomes]
rs7535997	0.97[EUR][1000 genomes]
rs7536257	0.81[EUR][1000 genomes]
rs7546691	0.83[EUR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85157000-85158000	Weak transcription	Small Intestine	intestine
2	chr1:85157000-85158200	Enhancers	Brain Substantia Nigra	brain
3	chr1:85157000-85158400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:85157000-85158400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:85157000-85158600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:85157000-85158600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr1:85157000-85158600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:85157000-85158600	Enhancers	Liver	Liver
9	chr1:85157000-85158600	Enhancers	Stomach Mucosa	stomach
10	chr1:85157000-85158800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:85157000-85159000	Enhancers	Primary hematopoietic stem cells	blood
12	chr1:85157000-85163000	Weak transcription	Aorta	Aorta
13	chr1:85157000-85164000	Weak transcription	Fetal Lung	lung
14	chr1:85157000-85164600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:85157200-85158000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr1:85157200-85158000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:85157200-85158200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr1:85157200-85158200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:85157200-85158200	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr1:85157200-85158200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr1:85157200-85158400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr1:85157200-85158400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:85157200-85158400	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr1:85157200-85158400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr1:85157200-85158400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr1:85157200-85158400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr1:85157200-85158400	Enhancers	Fetal Thymus	thymus
28	chr1:85157200-85158600	Enhancers	Primary B cells from cord blood	blood
29	chr1:85157200-85158600	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr1:85157200-85158600	Enhancers	Spleen	Spleen
31	chr1:85157200-85158800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr1:85157200-85162800	Weak transcription	NHDF-Ad	bronchial
33	chr1:85157200-85163000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr1:85157200-85163400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:85157200-85163800	Weak transcription	Brain Hippocampus Middle	brain
36	chr1:85157400-85158000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr1:85157400-85158000	Enhancers	Dnd41	blood
38	chr1:85157400-85158000	Enhancers	GM12878-XiMat	blood
39	chr1:85157400-85158200	Enhancers	H1 Cell Line	embryonic stem cell
40	chr1:85157400-85158200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:85157400-85158200	Enhancers	Primary T cells from cord blood	blood
42	chr1:85157400-85158200	Weak transcription	HMEC	breast
43	chr1:85157400-85158400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr1:85157400-85158400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr1:85157400-85158400	Enhancers	Fetal Kidney	kidney
46	chr1:85157400-85158600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr1:85157400-85158600	Enhancers	Duodenum Mucosa	Duodenum
48	chr1:85157400-85158600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr1:85157400-85158600	Enhancers	Thymus	Thymus
50	chr1:85157400-85158600	Enhancers	HepG2	liver

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