Variant report

Variant	rs7527484
Chromosome Location	chr1:85139911-85139912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85139380..85142017-chr1:85145242..85147698,3	K562	blood:
2	chr1:85138346..85141703-chr1:85144174..85147354,4	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10874456	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10874457	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1340524	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17376391	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2911560	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2911569	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2911572	0.87[EUR][1000 genomes]
rs2911580	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs2911582	0.90[EUR][1000 genomes]
rs2911612	0.83[EUR][1000 genomes]
rs2943662	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2994436	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994438	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994441	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994442	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994444	0.81[EUR][1000 genomes]
rs2994445	0.83[EUR][1000 genomes]
rs2994609	0.87[EUR][1000 genomes]
rs2994939	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994945	0.83[EUR][1000 genomes]
rs2994950	0.85[EUR][1000 genomes]
rs3021456	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4434855	0.89[EUR][1000 genomes]
rs4907090	0.89[EUR][1000 genomes]
rs6576719	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6576720	0.92[EUR][1000 genomes]
rs72954036	0.90[EUR][1000 genomes]
rs7535997	0.90[EUR][1000 genomes]
rs7536257	0.83[EUR][1000 genomes]
rs7546691	0.85[EUR][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85087000-85147400	Weak transcription	Gastric	stomach
2	chr1:85106200-85140400	Weak transcription	NHEK	skin
3	chr1:85106400-85155400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:85108000-85155000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:85111800-85152000	Weak transcription	Aorta	Aorta
6	chr1:85123800-85140600	Weak transcription	Brain Substantia Nigra	brain
7	chr1:85124400-85144400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:85124400-85145200	Weak transcription	Fetal Brain Male	brain
9	chr1:85124400-85149200	Weak transcription	Brain Angular Gyrus	brain
10	chr1:85124600-85140200	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:85124600-85154400	Weak transcription	A549	lung
12	chr1:85124800-85153800	Weak transcription	Hela-S3	cervix
13	chr1:85125000-85153400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:85125000-85153600	Weak transcription	Fetal Kidney	kidney
15	chr1:85125600-85141600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr1:85126200-85140200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:85126200-85154000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr1:85126400-85143000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr1:85126400-85154200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr1:85126400-85154800	Weak transcription	Fetal Muscle Leg	muscle
21	chr1:85126400-85155200	Weak transcription	Left Ventricle	heart
22	chr1:85126600-85152200	Weak transcription	Thymus	Thymus
23	chr1:85126600-85153400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:85126600-85154400	Weak transcription	Fetal Stomach	stomach
25	chr1:85126800-85141400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:85127800-85140600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr1:85127800-85154400	Weak transcription	Brain Germinal Matrix	brain
28	chr1:85128200-85153600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:85128400-85140800	Weak transcription	Brain Anterior Caudate	brain
30	chr1:85128400-85141000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:85128600-85153200	Weak transcription	Dnd41	blood
32	chr1:85128800-85151000	Weak transcription	Fetal Brain Female	brain
33	chr1:85130000-85143000	Weak transcription	Primary B cells from cord blood	blood
34	chr1:85130400-85153600	Weak transcription	NHDF-Ad	bronchial
35	chr1:85131800-85143200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:85132000-85145200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:85133600-85143200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr1:85134400-85153400	Weak transcription	NHLF	lung
39	chr1:85136200-85143400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr1:85138000-85141000	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr1:85138000-85141000	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr1:85138000-85154800	Weak transcription	HSMMtube	muscle
43	chr1:85138200-85140600	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr1:85138200-85141000	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr1:85138400-85141800	Enhancers	H1 Cell Line	embryonic stem cell
46	chr1:85138400-85143000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:85138400-85153400	Weak transcription	Fetal Thymus	thymus
48	chr1:85138600-85153400	Weak transcription	HSMM	muscle
49	chr1:85138800-85140000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr1:85138800-85142000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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