Variant report

Variant	rs7535997
Chromosome Location	chr1:85182579-85182580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85155315..85160651-chr1:85179679..85182911,5	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

rs_ID	r²[population]
rs10874456	0.88[EUR][1000 genomes]
rs10874457	0.92[EUR][1000 genomes]
rs1340524	0.92[EUR][1000 genomes]
rs1538848	0.84[EUR][1000 genomes]
rs17376391	0.90[EUR][1000 genomes]
rs2911560	0.85[EUR][1000 genomes]
rs2911569	0.85[EUR][1000 genomes]
rs2911572	0.97[EUR][1000 genomes]
rs2911580	0.88[CEU][hapmap];1.00[EUR][1000 genomes]
rs2911582	1.00[EUR][1000 genomes]
rs2911612	0.83[EUR][1000 genomes]
rs2943662	0.83[EUR][1000 genomes]
rs2994436	0.85[EUR][1000 genomes]
rs2994438	0.85[EUR][1000 genomes]
rs2994441	0.85[EUR][1000 genomes]
rs2994442	0.85[EUR][1000 genomes]
rs2994444	0.81[EUR][1000 genomes]
rs2994445	0.83[EUR][1000 genomes]
rs2994609	0.86[CEU][hapmap];0.97[EUR][1000 genomes]
rs2994939	0.85[EUR][1000 genomes]
rs2994945	0.83[EUR][1000 genomes]
rs2994950	0.85[EUR][1000 genomes]
rs3021456	0.85[EUR][1000 genomes]
rs4434855	0.90[EUR][1000 genomes]
rs4907090	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6576719	0.92[EUR][1000 genomes]
rs6576720	0.92[EUR][1000 genomes]
rs72954036	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7527484	0.90[EUR][1000 genomes]
rs7536257	0.83[EUR][1000 genomes]
rs7546691	0.85[EUR][1000 genomes]

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85171600-85184400	Weak transcription	Fetal Kidney	kidney
2	chr1:85175000-85184200	Weak transcription	Fetal Intestine Large	intestine
3	chr1:85177000-85183200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:85178000-85185200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:85178600-85185000	Weak transcription	NH-A	brain
6	chr1:85178800-85184600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:85178800-85184800	Weak transcription	NHLF	lung
8	chr1:85178800-85185600	Weak transcription	Osteobl	bone
9	chr1:85179600-85185000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:85180200-85184800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:85181600-85184400	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:85181600-85185000	Weak transcription	Brain Angular Gyrus	brain
13	chr1:85181600-85185400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:85181800-85184400	Weak transcription	Fetal Intestine Small	intestine
15	chr1:85181800-85184600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:85181800-85184600	Weak transcription	Fetal Brain Male	brain
17	chr1:85181800-85185000	Weak transcription	Brain Substantia Nigra	brain
18	chr1:85181800-85185000	Weak transcription	Stomach Mucosa	stomach
19	chr1:85181800-85185400	Weak transcription	Fetal Thymus	thymus
20	chr1:85181800-85185600	Weak transcription	K562	blood
21	chr1:85181800-85190200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:85182000-85184600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr1:85182000-85184600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr1:85182000-85185600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:85182000-85189600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr1:85182200-85184600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:85182200-85184600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr1:85182200-85185600	Weak transcription	Fetal Brain Female	brain

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