Variant report

Variant	rs4434855
Chromosome Location	chr1:85153701-85153702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85153044..85155913-chr1:85168206..85170903,2	K562	blood:
2	chr1:85151664..85154712-chr1:85171325..85174497,4	K562	blood:
3	chr1:85152648..85155097-chr1:85155098..85157489,2	MCF-7	breast:
4	chr1:85150908..85155231-chr1:85184814..85188587,5	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10874456	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10874457	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1340524	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1538848	0.84[EUR][1000 genomes]
rs17376391	0.89[EUR][1000 genomes]
rs2911560	0.85[EUR][1000 genomes]
rs2911569	0.85[EUR][1000 genomes]
rs2911572	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2911580	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2911582	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2911612	0.83[EUR][1000 genomes]
rs2943662	0.83[EUR][1000 genomes]
rs2994436	0.85[EUR][1000 genomes]
rs2994438	0.85[EUR][1000 genomes]
rs2994441	0.85[EUR][1000 genomes]
rs2994442	0.85[EUR][1000 genomes]
rs2994444	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2994445	0.83[EUR][1000 genomes]
rs2994609	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2994939	0.85[EUR][1000 genomes]
rs2994945	0.83[EUR][1000 genomes]
rs2994950	0.85[EUR][1000 genomes]
rs3021456	0.85[EUR][1000 genomes]
rs4907090	0.84[EUR][1000 genomes]
rs6576719	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6576720	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72954036	0.90[EUR][1000 genomes]
rs7527484	0.89[EUR][1000 genomes]
rs7535997	0.90[EUR][1000 genomes]
rs7536257	0.83[EUR][1000 genomes]
rs7546691	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947283	chr1:85150944-85155058	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85106400-85155400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:85108000-85155000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:85124600-85154400	Weak transcription	A549	lung
4	chr1:85124800-85153800	Weak transcription	Hela-S3	cervix
5	chr1:85126200-85154000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:85126400-85154200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr1:85126400-85154800	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:85126400-85155200	Weak transcription	Left Ventricle	heart
9	chr1:85126600-85154400	Weak transcription	Fetal Stomach	stomach
10	chr1:85127800-85154400	Weak transcription	Brain Germinal Matrix	brain
11	chr1:85138000-85154800	Weak transcription	HSMMtube	muscle
12	chr1:85138800-85155000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:85140000-85154200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr1:85141000-85154200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:85141000-85154200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr1:85141400-85154200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:85141800-85154200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr1:85142200-85154200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:85142200-85154200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:85143600-85154600	Weak transcription	Primary B cells from cord blood	blood
21	chr1:85143800-85154200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:85144400-85154400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr1:85151400-85154200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr1:85151400-85154400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:85152000-85154200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr1:85152000-85155000	Active TSS	Brain Angular Gyrus	brain
27	chr1:85152200-85154200	Enhancers	Thymus	Thymus
28	chr1:85152400-85154800	Weak transcription	Aorta	Aorta
29	chr1:85152600-85154000	Flanking Active TSS	GM12878-XiMat	blood
30	chr1:85152600-85154200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr1:85152600-85154400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr1:85152600-85156800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr1:85152800-85153800	Enhancers	Colon Smooth Muscle	Colon
34	chr1:85152800-85154000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:85152800-85154000	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr1:85152800-85154400	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr1:85152800-85155200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr1:85153000-85154200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr1:85153000-85154200	Active TSS	Fetal Brain Female	brain
40	chr1:85153000-85154400	Weak transcription	Brain Substantia Nigra	brain
41	chr1:85153000-85155000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr1:85153200-85154000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:85153200-85154200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr1:85153200-85154200	Enhancers	Osteobl	bone
45	chr1:85153200-85154400	Enhancers	Dnd41	blood
46	chr1:85153200-85154800	Enhancers	HepG2	liver
47	chr1:85153200-85155000	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr1:85153200-85155200	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr1:85153400-85154000	Flanking Active TSS	Fetal Intestine Small	intestine
50	chr1:85153400-85154200	Active TSS	Pancreatic Islets	Pancreatic Islet

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