Variant report

Variant	rs2911612
Chromosome Location	chr1:85108860-85108861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85087799..85089777-chr1:85107656..85110506,2	K562	blood:
2	chr1:85107451..85110887-chr1:85114026..85115969,4	K562	blood:
3	chr1:85107610..85110415-chr1:85125132..85127856,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10874456	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10874457	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1340524	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17376391	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs2911560	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2911569	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2911572	0.81[EUR][1000 genomes]
rs2911580	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs2911582	0.83[EUR][1000 genomes]
rs2943662	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2994436	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2994438	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2994441	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2994442	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2994444	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2994445	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2994609	0.81[EUR][1000 genomes]
rs2994939	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2994945	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2994950	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3021456	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4434855	0.83[EUR][1000 genomes]
rs6576719	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6576720	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72954036	0.83[EUR][1000 genomes]
rs7527484	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7535997	0.83[EUR][1000 genomes]
rs7536257	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7546691	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85087000-85147400	Weak transcription	Gastric	stomach
2	chr1:85099000-85109600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:85099000-85115600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:85099000-85123400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:85099200-85109200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:85099200-85109800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:85099200-85115000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:85099200-85121400	Weak transcription	NHDF-Ad	bronchial
9	chr1:85099200-85138200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:85099400-85115000	Weak transcription	Osteobl	bone
11	chr1:85099400-85131200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:85099600-85122600	Weak transcription	Fetal Brain Male	brain
13	chr1:85100600-85112400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:85100600-85116800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:85101000-85123200	Weak transcription	Fetal Kidney	kidney
16	chr1:85101000-85124400	Weak transcription	Hela-S3	cervix
17	chr1:85101400-85109000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:85101600-85121000	Weak transcription	Placenta	Placenta
19	chr1:85103000-85115000	Weak transcription	HMEC	breast
20	chr1:85104600-85116000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:85104800-85111600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:85105000-85119000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:85105800-85115000	Weak transcription	Small Intestine	intestine
24	chr1:85106000-85110800	Weak transcription	Fetal Thymus	thymus
25	chr1:85106000-85116600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:85106200-85112400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:85106200-85115000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:85106200-85140400	Weak transcription	NHEK	skin
29	chr1:85106400-85114800	Weak transcription	Fetal Brain Female	brain
30	chr1:85106400-85155400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr1:85106600-85114800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr1:85106600-85116800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:85107200-85110000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:85107200-85110000	Enhancers	Fetal Intestine Small	intestine
35	chr1:85107400-85110000	Enhancers	Fetal Heart	heart
36	chr1:85107600-85114800	Weak transcription	Primary B cells from cord blood	blood
37	chr1:85107600-85115000	Weak transcription	Primary T cells from cord blood	blood
38	chr1:85107800-85115400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr1:85108000-85109400	Enhancers	Fetal Intestine Large	intestine
40	chr1:85108000-85109800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr1:85108000-85110800	Weak transcription	HSMM	muscle
42	chr1:85108000-85123200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr1:85108000-85155000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr1:85108200-85109400	Enhancers	K562	blood
45	chr1:85108200-85109800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr1:85108200-85111200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr1:85108200-85111400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr1:85108200-85112600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr1:85108200-85115000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr1:85108200-85119000	Weak transcription	Right Ventricle	heart

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