Variant report

Variant	rs2911580
Chromosome Location	chr1:85165571-85165572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84970026..84972539-chr1:85163689..85165900,2	K562	blood:
2	chr1:85155313..85157722-chr1:85164509..85167486,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction
ENSG00000174021	Chromatin interaction
ENSG00000122432	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10874456	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs10874457	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs1340524	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs1538848	0.84[EUR][1000 genomes]
rs17376391	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs2911560	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2911569	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2911572	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2911582	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2911612	0.83[EUR][1000 genomes]
rs2943662	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs2994436	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994438	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994441	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994442	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994444	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2994445	0.83[EUR][1000 genomes]
rs2994609	0.87[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2994939	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994945	0.83[EUR][1000 genomes]
rs2994950	0.85[EUR][1000 genomes]
rs3021456	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs4434855	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4907090	0.95[EUR][1000 genomes]
rs6576719	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs6576720	0.92[EUR][1000 genomes]
rs72954036	1.00[EUR][1000 genomes]
rs7527484	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs7535997	0.88[CEU][hapmap];1.00[EUR][1000 genomes]
rs7536257	0.83[EUR][1000 genomes]
rs7546691	0.85[EUR][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85157400-85167200	Weak transcription	Psoas Muscle	Psoas
2	chr1:85162800-85166200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:85162800-85166200	Enhancers	Fetal Brain Male	brain
4	chr1:85162800-85166200	Enhancers	Fetal Intestine Large	intestine
5	chr1:85162800-85166400	Enhancers	Fetal Intestine Small	intestine
6	chr1:85163000-85166200	Enhancers	K562	blood
7	chr1:85163000-85166400	Enhancers	Colon Smooth Muscle	Colon
8	chr1:85163000-85168400	Enhancers	Rectal Smooth Muscle	rectum
9	chr1:85163200-85166200	Enhancers	Duodenum Mucosa	Duodenum
10	chr1:85163400-85166200	Enhancers	Fetal Muscle Leg	muscle
11	chr1:85163600-85168400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:85163800-85166400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:85164000-85165600	Weak transcription	Stomach Mucosa	stomach
14	chr1:85164000-85166000	Enhancers	Fetal Brain Female	brain
15	chr1:85164200-85167800	Enhancers	Primary T cells from cord blood	blood
16	chr1:85164400-85165800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:85164400-85166400	Enhancers	NHDF-Ad	bronchial
18	chr1:85164400-85167800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:85164800-85165800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:85164800-85166000	Weak transcription	Small Intestine	intestine
21	chr1:85164800-85166200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:85164800-85166400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr1:85164800-85166800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr1:85164800-85167000	Weak transcription	HSMM	muscle
25	chr1:85164800-85167000	Weak transcription	HSMMtube	muscle
26	chr1:85164800-85167200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr1:85164800-85167200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:85164800-85167200	Weak transcription	Aorta	Aorta
29	chr1:85164800-85167400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr1:85164800-85167400	Enhancers	NHLF	lung
31	chr1:85164800-85168000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:85164800-85169600	Weak transcription	Fetal Lung	lung
33	chr1:85164800-85170200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr1:85164800-85170800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr1:85164800-85170800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr1:85164800-85171000	Weak transcription	Fetal Kidney	kidney
37	chr1:85165000-85165800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:85165000-85166200	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr1:85165000-85167200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr1:85165000-85169600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr1:85165200-85165600	Weak transcription	Fetal Stomach	stomach
42	chr1:85165200-85166200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr1:85165200-85166800	Enhancers	Primary B cells from cord blood	blood
44	chr1:85165200-85167200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr1:85165200-85167200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr1:85165200-85167200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr1:85165200-85167200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr1:85165200-85167200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:85165200-85167200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr1:85165200-85167200	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links