Variant report

Variant	rs2911582
Chromosome Location	chr1:85167818-85167819
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10874456	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs10874457	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs1340524	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs1538848	0.84[EUR][1000 genomes]
rs17376391	0.88[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs2911560	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2911569	0.81[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs2911572	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2911580	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2911612	0.83[EUR][1000 genomes]
rs2943662	0.88[CEU][hapmap];1.00[GIH][hapmap];0.83[EUR][1000 genomes]
rs2994436	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994438	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994441	0.81[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs2994442	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2994444	0.81[EUR][1000 genomes]
rs2994445	0.83[EUR][1000 genomes]
rs2994609	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2994939	0.81[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs2994945	0.83[EUR][1000 genomes]
rs2994950	0.85[EUR][1000 genomes]
rs3021456	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs4434855	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4907090	0.95[EUR][1000 genomes]
rs6576719	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs6576720	0.92[EUR][1000 genomes]
rs72954036	1.00[EUR][1000 genomes]
rs7527484	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs7535997	0.88[CEU][hapmap];1.00[EUR][1000 genomes]
rs7536257	0.83[EUR][1000 genomes]
rs7546691	0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2911582	CTBS	cis	lymphoblastoid	seeQTL

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85163000-85168400	Enhancers	Rectal Smooth Muscle	rectum
2	chr1:85163600-85168400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:85164800-85168000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:85164800-85169600	Weak transcription	Fetal Lung	lung
5	chr1:85164800-85170200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:85164800-85170800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:85164800-85170800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:85164800-85171000	Weak transcription	Fetal Kidney	kidney
9	chr1:85165000-85169600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:85165200-85170200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:85165200-85179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:85166000-85168400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:85166000-85168400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:85166200-85168400	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:85166200-85169600	Weak transcription	Fetal Intestine Large	intestine
16	chr1:85166200-85170200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr1:85166200-85170600	Weak transcription	K562	blood
18	chr1:85166200-85173400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:85166400-85168200	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:85166400-85169600	Weak transcription	Fetal Intestine Small	intestine
21	chr1:85166400-85170200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr1:85166400-85170400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:85167200-85168000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr1:85167200-85168600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr1:85167200-85168600	Enhancers	Fetal Stomach	stomach
26	chr1:85167200-85168800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr1:85167400-85168200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:85167400-85168800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr1:85167400-85168800	Enhancers	Fetal Brain Male	brain
30	chr1:85167400-85169600	Weak transcription	Primary B cells from cord blood	blood
31	chr1:85167600-85168400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr1:85167600-85168800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:85167600-85169800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr1:85167600-85171400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:85167600-85173800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr1:85167600-85177000	Weak transcription	Aorta	Aorta
37	chr1:85167800-85168600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr1:85167800-85168800	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr1:85167800-85170000	Enhancers	Fetal Brain Female	brain

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